RnoEX6004617 @ rn6
Exon Skipping
Gene
ENSRNOG00000014673 | Eri2
Description
ERI1 exoribonuclease family member 2 [Source:RGD Symbol;Acc:1583889]
Coordinates
chr1:189540145-189543761:-
Coord C1 exon
chr1:189543680-189543761
Coord A exon
chr1:189543020-189543108
Coord C2 exon
chr1:189540145-189542863
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGATACTTTTATTTCCTCAGGCT
3' ss Score
8.38
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTTTTTTATAACAGAAAACCCAAAGGACTAAGTGGTGCCTTGCAGGAAGTGGGAATAGAATTTTCAGGACGAGAACATTCTG
Seq A exon
GCTTAGATGATTCTCGGAACACTGCTCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCCTAATGAAAATTACCAGGTCCTTGAACAAG
Seq C2 exon
GTTCTCACTAAGAAGAATCCCAAGATTTTGGCCAGAAATTTGGGTTTAGATCAAGTTGAAGAAGCATCTGCCTGCAACATTAGCATCCAGGATCCCAGCATAAACCAAAAGGAGCTCCAAAGTACAGGAAATCCCCAGGAAAATGCTCAAATGAATTCAGTTTGTGTGAATTCCTGTATAAAGGACCAATTACAACTAAAAAGCAACATGAAAGCAGATCTTTACAATATCAAACATAGCTTTCCTCTTTTCACTACCAGGTGCTCGACATCTGTGCAACAACTGTGTGCTCCCACCTTGAATCCAGCTCTCTATATACAGAAGCCAAGTAAAAGTGAGCAGCTTGCATCAAGTGACCGCTCAAAGTCCTCAGCACTTGACTCCAACTTGGTGCTTGTGTCTACAACCATCCCGTCTGTTAACCTTGTTTCTGATGTAGAAATGGGTCATACTTTTGACTGTTTACCGATGTTGGCTGAGTGGGAAGATGTAGTTTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014673-'11-12,'11-10,13-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.357
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(14.3=100)
A:
PF0092919=RNase_T=PD(5.8=36.7)
C2:
PF068397=zf-GRF=WD(100=11.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAAGGACTAAGTGGTGC
R:
TATGCTGGGATCCTGGATGCT
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]