HsaEX6042624 @ hg19
Exon Skipping
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:30541]
Coordinates
chr16:20802172-20811360:-
Coord C1 exon
chr16:20811279-20811360
Coord A exon
chr16:20810585-20810673
Coord C2 exon
chr16:20802172-20802254
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTGATATCTGTATCCTCAGGGT
3' ss Score
7.96
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTTTTCTATAGGAGAAAACCAAAAGGACTAAGTGGTGCCTTGCAGGAAGTAGGAATAGAATTCTCAGGACGAGAACATTCTG
Seq A exon
GGTTGGACGATTCTCGGAATACTGCCCTTCTTGCTTGGAAAATGATCAGAGATGGTTGTGTAATGAAAATTACAAGGTCGTTGAACAAG
Seq C2 exon
GGTCCCTTCCTCTTGCCTTCGTGGACCTGGAACAGTGATCTGGCCTCAGGGGACCAGCATGCTTTTCTTCAGCAAGAATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-'9-13,'9-9,10-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(14.3=100)
A:
PF0092919=RNase_T=PD(5.8=36.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATAGGAGAAAACCAAAAGGACT
R:
TGCTGAAGAAAAGCATGCTGG
Band lengths:
152-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)