MmuEX6013621 @ mm10
Exon Skipping
Gene
ENSMUSG00000030929 | Eri2
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:119782573-119787485:-
Coord C1 exon
chr7:119787404-119787485
Coord A exon
chr7:119786739-119786827
Coord C2 exon
chr7:119782573-119786544
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGATACTTTTATTTCCTCAGGCT
3' ss Score
8.38
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTTTTTTATAAAAGAAAACCCAAAGGACTGAGTGGTGCCTTGCAGGAAGTGGGAATAGAATTTTCAGGACGAGAACATTCTG
Seq A exon
GCTTAGATGATTCTCGGAACACTGCTCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCTTAATGAAAATTACCAGGTCCTTGAACAAG
Seq C2 exon
GTTCTCACTAAGAAGAATCCCAAGATTTTGGCCAGAAATTTGGGTACAGATCAAGTTGAAGAAGCAGCTACTTGCAACATGAGTATCCAGGGCCCCAGCATATATCAAAAGGAGCTCCAAAGTACAGTAAATGCAGAGGAAAATGCCCAGATGAATTCAGTCTGTGTGAATTCCTCCTGTATAAAGGGCCAATTGCAACCAAAAAGCAACATGAAAGCAGATCTTTACAATATCAGACATAGCTTTCCTCTTTTCACTACCAAGTCGTCGACATCTGTGGACCAACTGCATTCTCCCACCTTGAATCCACCTCTCACTATGCAAAAGCCAAGTAAAAGTGATCAGCTTGCACTGAATGACAGCTCAAAGTCCTCAACACTTAACTCCAACTTAGTGCTTGTATCTACAACCATTCCGTCAGTTAATCATGTTTCTGATGTAGAAATGGGTCATACTTTTGACTGTTTACCGATGTTGGCTGAGTGGGAAGATGTAGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929-'13-16,'13-14,14-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.392
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(14.3=100)
A:
PF0092919=RNase_T=PD(5.8=36.7)
C2:
PF068397=zf-GRF=WD(100=11.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGACTGAGTGGTGCCTTG
R:
GATATATGCTGGGGCCCTGGA
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types