DreEX0030694 @ danRer10
Exon Skipping
Gene
ENSDARG00000104392 | eri2
Description
ERI1 exoribonuclease family member 2 [Source:ZFIN;Acc:ZDB-GENE-050522-292]
Coordinates
chr1:58475217-58476192:+
Coord C1 exon
chr1:58475217-58475304
Coord A exon
chr1:58475641-58475729
Coord C2 exon
chr1:58475857-58476192
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTTCAGGTC
3' ss Score
10.66
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TTTCAGCTCTTCTATAACAGGAAACCCAAAGGACTGAGAGGAGCTCTGCTGGACCTCGGCATAGAGTTCACTGGCAGAGAACACTCAG
Seq A exon
GTCTGGTGGACGCCAGGAACACAGCTCTGCTGGCGCAGCGGATGATGACGGACGGCTGTCAGCTCTCCATCACCAGCCCTGAGCGCAGG
Seq C2 exon
GCGCAGGTGAAGCCCAGACCTCACACTCGACCCTCAGGGCTGAGAGAACCACACACACACCTGACCAACGTGATGAACAGCAGAGACACACACACAAACACACACGCACACCTGACCAGTGTGAAGAGCAGCAGAGACACACACACTCACACAAACACACACCTGACCAACGTGAAGAGCAGCAGAGACGCACACACACGTCTCCCAGCGCTGATGAACGGAAGCATCCGAGCGCGACACACACACACACAGCAGACGTGTGCGAACAGCAGCGACACACACATTGCGTCAGCGAGTGTGTGTGAGGTGCTGGTGTCTCCATTCACTCTTCTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104392_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.767 C2=0.830
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCATAGAGTTCACTGGCAG
R:
CTCTGCTGCTCTTCACACTGG
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]