GgaEX0002729 @ galGal3
Exon Skipping
Gene
ENSGALG00000002214 | ERI2
Description
NA
Coordinates
chr14:15637955-15639100:-
Coord C1 exon
chr14:15639019-15639100
Coord A exon
chr14:15638429-15638517
Coord C2 exon
chr14:15637955-15638242
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTATAACCATACTTTTGAAGGGT
3' ss Score
3.57
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GCCTTCTATAATAGAAAACCTAAAGGGCTGAGTGGTGCTTTGCAGTACGTGGGGCTGGCTTTTGTAGGAAGGGAACATTCTG
Seq A exon
GGTTGGATGACTCTCGGAATACTGCTCGTCTTGCTTGGAGGCTGATTTGTGATGGGTGTGTGCTGAAGATTACTAAATCTTTGGATAAG
Seq C2 exon
TCCTATCCTAGGAAGAACTTGATTTCCAGAACGCTGAATACCAACTCTGCTGACAAGACTCTGCCAGGAAGTAGCAGCAGCCTTGAAACATCCAGAGACAGAACTTGCAAAGCAAACTCTCTGACAGAGAGAAGCCACAATGGTACTGTTGGAATTGTGGTAAATTCTGATGTACAACCTGCAGGACAGGCCACTTGCAGTGATTGCTCTACAGACATGCATGTTGTATCCGGCAGCAGCTCAAGGACTGATCTGTGTGAAGAAACCCGAAGCTCTTCCACAGTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002214_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(14.4=100)
A:
PF0092919=RNase_T=PD(5.9=36.7)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGCTTTTGTAGGAAGGG
R:
TCCAACAGTACCATTGTGGCT
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event