GgaEX0002728 @ galGal3
Exon Skipping
Gene
ENSGALG00000002214 | ERI2
Description
NA
Coordinates
chr14:15637955-15640239:-
Coord C1 exon
chr14:15640139-15640239
Coord A exon
chr14:15639019-15639100
Coord C2 exon
chr14:15637955-15638242
Length
82 bp
Sequences
Splice sites
3' ss Seq
AGCTGCATGTTTCTCCTTAGGCC
3' ss Score
8.76
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACTGGGACCTGGGTGTGTGCTTGCACTACGAGTGTAAGAGGAAGCAGTTATGGAAACCTGACATCTTCAATTCATGGATTGATCTCAAAGCAACATACAGG
Seq A exon
GCCTTCTATAATAGAAAACCTAAAGGGCTGAGTGGTGCTTTGCAGTACGTGGGGCTGGCTTTTGTAGGAAGGGAACATTCTG
Seq C2 exon
TCCTATCCTAGGAAGAACTTGATTTCCAGAACGCTGAATACCAACTCTGCTGACAAGACTCTGCCAGGAAGTAGCAGCAGCCTTGAAACATCCAGAGACAGAACTTGCAAAGCAAACTCTCTGACAGAGAGAAGCCACAATGGTACTGTTGGAATTGTGGTAAATTCTGATGTACAACCTGCAGGACAGGCCACTTGCAGTGATTGCTCTACAGACATGCATGTTGTATCCGGCAGCAGCTCAAGGACTGATCTGTGTGAAGAAACCCGAAGCTCTTCCACAGTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002214_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(17.6=100)
A:
PF0092919=RNase_T=FE(14.4=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGCTTGCACTACGAGT
R:
CAAGGCTGCTGCTACTTCCTG
Band lengths:
174-256
Functional annotations
There are 0 annotated functions for this event