MmuEX0017306 @ mm9
Exon Skipping
Gene
ENSMUSG00000030929 | Eri2
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:126930253-126931348:-
Coord C1 exon
chr7:126931248-126931348
Coord A exon
chr7:126930918-126930999
Coord C2 exon
chr7:126930253-126930341
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTTTATTTGATTAGCTT
3' ss Score
5.28
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
ACTGGGACTTGGGCGTTTGCCTAGAGTATGAGTGTAGAAGAAAGCAGCTGTTAAAACCTGTGTTCTTAAACTCTTGGATTGATCTCAGAGCAACTTACAGG
Seq A exon
CTTTTTTATAAAAGAAAACCCAAAGGACTGAGTGGTGCCTTGCAGGAAGTGGGAATAGAATTTTCAGGACGAGAACATTCTG
Seq C2 exon
GCTTAGATGATTCTCGGAACACTGCTCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCTTAATGAAAATTACCAGGTCCTTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(17.5=100)
A:
PF0092919=RNase_T=FE(14.3=100)
C2:
PF0092919=RNase_T=PD(5.8=36.7)
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGACTTGGGCGTTTG
R:
TCATTAAGCAACCATCCCTGATCA
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types