BtaEX0013235 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006448 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr25:18658923-18665736:-
Coord C1 exon
chr25:18665636-18665736
Coord A exon
chr25:18665009-18665090
Coord C2 exon
chr25:18658923-18659011
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATTGTCTTTTATTTGACTAGATT
3' ss Score
6.44
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
ACTGGGACTTGGGGGTTTGCCTGGAGTATGAATGTAAAAGAAAACAACTGTTAAAACCTGTGTTCCTTAATTCTTGGATTGATCTCAGAGTAACTTACAAG
Seq A exon
ATTTTCTATAGAAGAAAACCAAAAGGACTCAGTGGTGCCCTGCAGGAAGTAGGAATGCAATTCTTGGGGCGAGAACATTTTG
Seq C2 exon
GGTTGGATGATTCTCGGAATACTGCCCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCTTAATGAAGATTACAAGGTCTTTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006448-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(17.5=100)
A:
PF0092919=RNase_T=FE(14.3=100)
C2:
PF0092919=RNase_T=PD(5.8=36.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGACTTGGGGGTTTGC
R:
TCTTCATTAAGCAACCATCCCTGA
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development