GgaEX0002728 @ galGal4
Exon Skipping
Gene
ENSGALG00000026038 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr14:14919945-14926161:-
Coord C1 exon
chr14:14926061-14926161
Coord A exon
chr14:14924941-14925022
Coord C2 exon
chr14:14919945-14924164
Length
82 bp
Sequences
Splice sites
3' ss Seq
AGCTGCATGTTTCTCCTTAGGCC
3' ss Score
8.76
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACTGGGACCTGGGTGTGTGCTTGCACTACGAGTGTAAGAGGAAGCAGTTATGGAAACCTGACATCTTCAATTCATGGATTGATCTCAAAGCAACATACAGG
Seq A exon
GCCTTCTATAATAGAAAACCTAAAGGGCTGAGTGGTGCTTTGCAGTACGTGGGGCTGGCTTTTGTAGGAAGGGAACATTCTG
Seq C2 exon
TCCTATCCTAGGAAGAACTTGATTTCCAGAACGCTGAATACCAACTCTGCTGACAAGACTCTGCCAGGAAGTAGCAGCAGCCTTGAAACATCCAGAGACAGAACTTGCAAAGCAAACTCTCTGACAGAGAGAAGCCACAATGGTACTGTTGGAATTGTGGTAAATTCTGATGTACAACCTGCAGGACAGGCCACTTGCAGTGATTGCTCTACAGACATGCATGTTGTATCCGGCAGCAGCTCAAGGACTGATCTGTGTGAAGAAACCCGAAGCTCTTCCACAGTATCTGCTGACAGATTTCCTCTTCTGGGATGTGCACAGCAATCTCACAGTACTTTATCACCAGGCATTCAGCAAGGATTGAACAGTGGGCATCTCATGAGCACAGGAAGGTACAGCTCTCCAGTGTGTGGGTCTGGACTAGTACTCATCTCCACCACCATCTCCTCAGTTAATACCTCCAGTGAGGATACAGGCACTCGTTCTGATTGCTTGTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026038_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.287
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(17.6=100)
A:
PF0092919=RNase_T=FE(14.4=100)
C2:
PF068397=zf-GRF=WD(100=11.1)
Main Inclusion Isoform:
ENSGALT00000045747fB3418
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGCTTGCACTACGAGT
R:
CAAGGCTGCTGCTACTTCCTG
Band lengths:
174-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]