GgaINT1012448 @ galGal4
Intron Retention
Gene
ENSGALG00000026038 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr14:14924351-14925022:-
Coord C1 exon
chr14:14924941-14925022
Coord A exon
chr14:14924440-14924940
Coord C2 exon
chr14:14924351-14924439
Length
501 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GTATAACCATACTTTTGAAGGGT
3' ss Score
3.57
Exon sequences
Seq C1 exon
GCCTTCTATAATAGAAAACCTAAAGGGCTGAGTGGTGCTTTGCAGTACGTGGGGCTGGCTTTTGTAGGAAGGGAACATTCTG
Seq A exon
GTAAGTGTGATATGATGAACCTCTCTCTCTATATATGAATATATATTATTTCCAGGTATACAATGTTCTGGTCAATAAAACCATCCAAGTAGAAATGCTTGAAAGGTCATTTCTAATCTCACGCTTAATTTTAGAATTCTCTCCCAGAGCTTTTGTCTGTGTGTTCCACAAGATCAAGTTCTGAGTTGCTGGGGGCACAAAAGGAAAAAGAGAGCAAGAAAAGGATAAGGGAACTTGATCTTACCTGATAGCTCCAGGCAGCTTATGAGTATGAAACACAATATATATTAAATACAAATAATAAATACAAACATAATATTTATTTTTTTAATTTTTGACATGGTTAATAAAAAACAGCAAGAATTTTCACAGTTGTGGCTATATCTGTTCAGCTGCATGAGTTCTTCTTAAGTGTAGGTAAATGTTACTTGTCATCTAATAAGAACTGTCAGCAGTAGTAGATTAAAAGGAGGATGTTATTGTATAACCATACTTTTGAAG
Seq C2 exon
GGTTGGATGACTCTCGGAATACTGCTCGTCTTGCTTGGAGGCTGATTTGTGATGGGTGTGTGCTGAAGATTACTAAATCTTTGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026038:ENSGALT00000045747:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(14.4=100)
A:
NA
C2:
PF0092919=RNase_T=PD(5.9=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]