RnoINT0056310 @ rn6
Intron Retention
Gene
ENSRNOG00000014673 | Eri2
Description
ERI1 exoribonuclease family member 2 [Source:RGD Symbol;Acc:1583889]
Coordinates
chr1:189543020-189543761:-
Coord C1 exon
chr1:189543680-189543761
Coord A exon
chr1:189543109-189543679
Coord C2 exon
chr1:189543020-189543108
Length
571 bp
Sequences
Splice sites
5' ss Seq
CTGGTTCGT
5' ss Score
5.4
3' ss Seq
TGATACTTTTATTTCCTCAGGCT
3' ss Score
8.38
Exon sequences
Seq C1 exon
CTTTTTTATAACAGAAAACCCAAAGGACTAAGTGGTGCCTTGCAGGAAGTGGGAATAGAATTTTCAGGACGAGAACATTCTG
Seq A exon
GTTCGTATAAACCGGTAATTATTTCATTATATAAGTCATTTAGTCATATTAAAATTTTTCATATTAGTTTCATTTAGGGGGTAGTGTCATTATTAATAGCTTGCAGGCTAAAAAAAAATGTTCTTAACCTATATAACTCAAATTATTTCTGATTTTTGAGTTACCGGTCTCTTGAATTTAGATAAAGACCACAATCCAGTGGTTCTCGTTGGTTTAAAAATAAGTAAATAATGAAAATAACGAGCACATCACCTAGAAATACAGGTCCCTAGATAACATGAAGAAATAAACTGAGCATGACTAATTTTTCACAAATGATGGTCTGTACAGGTCACTGGTCACAATTATGAAAGCTGGGTGACAAATTTTCACCTGTGCAAACACAAGTCATTTTATCTCTCATTGGTAATGCTTTCACAACTTCCCACAGATGAATTTATGATAATTGAAATCAGCAAGTGGTCATAAAAGTAGCAGTATGCCCCAATTTCTGTTTAAATGTAATTTGTTTTCTGTTATTTCTTTATGGTAGTACCATGGCATTCAGTGTTTGATACTTTTATTTCCTCAG
Seq C2 exon
GCTTAGATGATTCTCGGAACACTGCTCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCCTAATGAAAATTACCAGGTCCTTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014673:ENSRNOT00000019747:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(14.3=100)
A:
NA
C2:
PF0092919=RNase_T=PD(5.8=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]