RnoALTD0010612-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014673 | Eri2
Description
ERI1 exoribonuclease family member 2 [Source:RGD Symbol;Acc:1583889]
Coordinates
chr1:189543020-189543761:-
Coord C1 exon
chr1:189543680-189543761
Coord A exon
chr1:189543666-189543679
Coord C2 exon
chr1:189543020-189543108
Length
14 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATT
5' ss Score
6.28
3' ss Seq
TGATACTTTTATTTCCTCAGGCT
3' ss Score
8.38
Exon sequences
Seq C1 exon
CTTTTTTATAACAGAAAACCCAAAGGACTAAGTGGTGCCTTGCAGGAAGTGGGAATAGAATTTTCAGGACGAGAACATTCTG
Seq A exon
GTTCGTATAAACCG
Seq C2 exon
GCTTAGATGATTCTCGGAACACTGCTCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCCTAATGAAAATTACCAGGTCCTTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014673-11-10,12-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(14.3=100)
A:
NA
C2:
PF0092919=RNase_T=PD(5.8=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAGGACTAAGTGGTGCC
R:
AGCAAGAAGAGCAGTGTTCCG
Band lengths:
99-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]