BtaEX6108989 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006448 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr25:18657384-18665090:-
Coord C1 exon
chr25:18665009-18665090
Coord A exon
chr25:18658923-18659011
Coord C2 exon
chr25:18657384-18658721
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTGATATCTCTTTCCTCAGGGT
3' ss Score
9.52
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ATTTTCTATAGAAGAAAACCAAAAGGACTCAGTGGTGCCCTGCAGGAAGTAGGAATGCAATTCTTGGGGCGAGAACATTTTG
Seq A exon
GGTTGGATGATTCTCGGAATACTGCCCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCTTAATGAAGATTACAAGGTCTTTGAACAAG
Seq C2 exon
GTTTCCACTAAGAGGATTCCTAACATTTTCACCAGAAATTTGAATATGGATCAAGTTGAAGAAACATCAACCTGTACCAATAACACTCATGATCCCAGCATATATGGTGGGGAGCCTAAAAATTCAATAAAACCTTACAAGAAAATTCAAATGAAGTCAGTTGGTGTGAATTCTCCTATAAAGGTACAGCAGGATCAGTTACAACAAAAGGACAGCATAAAAGCAGGTCTTTGCAATGTCAGAAGCTGTTTATCTCTCTCTAATGCTACTAAGTCCTGGACTTCTCTGGGGCAGTTGCAGTCTTCCAGCCGGAATACACCTATGCAGAAGCAAATAAACCAACATCTTGCATTTAATACCAATTCTAAGTCTTTAGCAGTTGGTTCAGAACTGGTACCTGTTTCAACTACCATTTCATCTTTTAATAATGTTTCTGATATAGAAGTGAGTTCTGCTCTTGACTGTTTACCTATGTTGGCTGATTGGGAGGATGTAGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006448-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(14.3=100)
A:
PF0092919=RNase_T=PD(5.8=36.7)
C2:
PF068397=zf-GRF=WD(100=11.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAAGGACTCAGTGGTGC
R:
AGGCTCCCCACCATATATGCT
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]