MmuINT0058885 @ mm10
Intron Retention
Gene
ENSMUSG00000030929 | Eri2
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:119783831-119786827:-
Coord C1 exon
chr7:119786739-119786827
Coord A exon
chr7:119786545-119786738
Coord C2 exon
chr7:119783831-119786544
Length
194 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ATTTGTCTGTGGAATCATAGGTT
3' ss Score
4.63
Exon sequences
Seq C1 exon
GCTTAGATGATTCTCGGAACACTGCTCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCTTAATGAAAATTACCAGGTCCTTGAACAAG
Seq A exon
GTTAGTGGTGTCTTGTCACTTTATTCTGTCATTTTGCGTCCTCGGGTAGTAGTCATGTTCATTAAAATGTTGATTTCATGTGTGTAGTCATTTATGCACCAATGACATTTTTCCTTTTCTTGTCATATATAATGTCTACACAAGAAATTATAAATACGGTTCCTAAAGCAATGGATTTGTCTGTGGAATCATAG
Seq C2 exon
GTTCTCACTAAGAAGAATCCCAAGATTTTGGCCAGAAATTTGGGTACAGATCAAGTTGAAGAAGCAGCTACTTGCAACATGAGTATCCAGGGCCCCAGCATATATCAAAAGGAGCTCCAAAGTACAGTAAATGCAGAGGAAAATGCCCAGATGAATTCAGTCTGTGTGAATTCCTCCTGTATAAAGGGCCAATTGCAACCAAAAAGCAACATGAAAGCAGATCTTTACAATATCAGACATAGCTTTCCTCTTTTCACTACCAAGTCGTCGACATCTGTGGACCAACTGCATTCTCCCACCTTGAATCCACCTCTCACTATGCAAAAGCCAAGTAAAAGTGATCAGCTTGCACTGAATGACAGCTCAAAGTCCTCAACACTTAACTCCAACTTAGTGCTTGTATCTACAACCATTCCGTCAGTTAATCATGTTTCTGATGTAGAAATGGGTCATACTTTTGACTGTTTACCGATGTTGGCTGAGTGGGAAGATGTAGTTTTACTGCCAGCATCTCAGGCTGAGCCAGACACAGACTGTATGCCTCCTGTTAGTGACACAAATGTCAGTACTTCACTTAATTCTGCAGAGAGATCACTTGTTCCAGAAGAACCAGAAACCCTTAGTTATGAAAACTTTGAAGACCTTCAGGAAACTCCTCAAAACTCTGAGACATCTAAGTCTATTGTGTATAAGAGTCCTCACAGTACAGTCTATGATGTAAAAGGAGCCAAACACCCAGGTTCGGATGCCTCTGCTTTTAAGTTACCCAAATGCAAACCATTTCCTTTCACCAGTGTTCATGCCAGTGCAGCATATCCTTCAGTTCTGAGGAAAGATCCTCTCCTTTCAGGTGGCACTAAAAGGAATTCACTTAGTCCTCCAGCTTCCCCGAGAACCAAAAGGCAGACCTTCACTATTCATGAAGAAAAGCCTACATCATCTATTTGCTCCCCAGGAACAACTTCTTGTAGAGTTTCTCCCTCTGTACTAACATCTACAGTTAATCTACAGGAGCCTTGGAAGACTGGAAAGATGACACCGCCTCTATGCAAGTGTGGCAGAAGATCTAAGCGGCTTATTGTTTCTAATAATGGGCCAAACCACGGGAAAGCCTTCTATTGTTGCCCAGTTGGGAAATACCAACAAGACAGAAAATGCTGTGGTTATTTTAAATGGGAACAAACACTTCAAAAAGAAAGGACCAATGGCAAAGCTCTGTCTCATTCCTCAGAAGGGCTCACTTTCAGCTCTCCAGAAACAAGCCGTATTCATGACAGAAATTTAAGTTTTCCTATTAAGAATTCTTTACGACTCAGACCTTCAATGAGACATTGATAAAACTCTCTTCTAAACTGCCTTCAGTGTATGTCTTATCTGACTTTATGCAGGAAAGATAGCAGTGGGGTTTACCTTACGCAGCCTCAGCATATCTGAGCACTGCAGCTACACCGGAGCAGTTCATACAAACAGAAGGGACATGTCTTTCATGGCGTGCACTCTTGCCAAGTAGTCTATCAACTGTCATCTGTTCATGAAGCAATCCTTGTTCCTAGATTTCCAAGTATGAACATTTAGATAATGTCATATATTTCATATGTTAACATTTGCTGAATTTATCAAACTATCATAAAGAACTACAAGGAAAAACTATTTTTACAAACCATGTTTATTAGGTTAAATTTAATAACTAGCCACAGAATGTGACAGCTTTCTCTTATACTTTGACCTTCAAACAAATTTCAAACTATTTTTAAATTACTTGAATAAAAATATGACTAGTAAAGTTTTAGGTAAATATTCTAAGAATTATGACAGTTTCTTAAAAATAGGGTTCTTTTCAAAGTTTGAAGATTTGTTCTGATTTGTATATTAGCATATTAGAATTGTTCAGTTATGTTTTGAAAATGCCTGGGTACAGATTTAGTTTAGAATCTGCTCCTAAAATAAATTTTAAGACATCTCAGCATCTGGCGACATTCATTTTATGTTGGCAGATTACAGGAGCATTGACATGAATGCAGAAGGATTCAATAATGATTATTTGATTTCAGAATTCAGGCTCTGATGTCATAACTACAAAATACTTTCAATCCAGTTTCAAAGCAGTCTGCCCACATAATCTGTGGTTCCTGCAGACTTGTAGACACTGTGTTTATAGCTACACAGGTGATTAGTGGGAGGAGTTCAAGTTGTTACCCATTCCTTTTTCCTCAGTTCATTTCTTTTGACCTTCCCACTGACAGTCTTCGGCAGCTCTTCAATAAATTCTACCTGTTGGTAGTAAGGGCAGGAAGAGGTTAGTCCAGCACTTGTTCACTTCCTTCAGGTCATGCCGGTTACTCAAGAGCTCTGTTTCAAACTCTAGGTGAAAGGATAAAGTTAGGTTTTGTTCTTTTTGTTTTTTACATTAAAATTATGAGCTAATTGACTGAATTATGTTGGGGGCTTCGGTTTAGCCTCGGAGTTTTTGATTAACTATTGTCATTAGCTCTGTTTGAAACCTCTCGCATAGTATATCTGAGGAGAAAACTGTCCAAAGCACTGGACTGACATCACTGGTACCAGGGACGCCTACCTTTCTGGGGTATTTGTAAGGCGCTGTAGTCTTCTTCACGTGCTCCTGGATCTCCTTTTTCAGTTGCTCTTGATCATGGGACTTGTAATCAGGATTCAGGACAATAAAAGCCTTTACTACCTAAAGAAGACATGTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929:ENSMUST00000150844:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.392
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(5.8=36.7)
A:
NA
C2:
PF068397=zf-GRF=WD(100=11.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAACACTGCTCTTCTTGCT
R:
ACACAGACTGAATTCATCTGGGC
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types