BtaINT0057684 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006448 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr25:18657384-18659011:-
Coord C1 exon
chr25:18658923-18659011
Coord A exon
chr25:18658722-18658922
Coord C2 exon
chr25:18657384-18658721
Length
201 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TTTTATCTGTGGAATCTTAGGTT
3' ss Score
6.13
Exon sequences
Seq C1 exon
GGTTGGATGATTCTCGGAATACTGCCCTTCTTGCTTGGAAAATGATCAGGGATGGTTGCTTAATGAAGATTACAAGGTCTTTGAACAAG
Seq A exon
GTTAGTGGTGTCTTGCCTCTTTATTCCGTTATTTCAAACTCCAGAAGTAATTATAGGCTAACTGAAATGTAGATGTTATGTATGCTGTCATTTATAGATCAATCGGTGCTGACGTTTTTCTTTTTTGTCATATTATATAATACTAAAGAAATTATGAATGCAGGGTTTCTAAAATTGTTGGTTTTATCTGTGGAATCTTAG
Seq C2 exon
GTTTCCACTAAGAGGATTCCTAACATTTTCACCAGAAATTTGAATATGGATCAAGTTGAAGAAACATCAACCTGTACCAATAACACTCATGATCCCAGCATATATGGTGGGGAGCCTAAAAATTCAATAAAACCTTACAAGAAAATTCAAATGAAGTCAGTTGGTGTGAATTCTCCTATAAAGGTACAGCAGGATCAGTTACAACAAAAGGACAGCATAAAAGCAGGTCTTTGCAATGTCAGAAGCTGTTTATCTCTCTCTAATGCTACTAAGTCCTGGACTTCTCTGGGGCAGTTGCAGTCTTCCAGCCGGAATACACCTATGCAGAAGCAAATAAACCAACATCTTGCATTTAATACCAATTCTAAGTCTTTAGCAGTTGGTTCAGAACTGGTACCTGTTTCAACTACCATTTCATCTTTTAATAATGTTTCTGATATAGAAGTGAGTTCTGCTCTTGACTGTTTACCTATGTTGGCTGATTGGGAGGATGTAGCTTTACTGCCAGCATCTCAGCCCGAGCAAAATATATCTTGTATACCTCTTGTTAGTGACTCAAATGTAGACACTTCACTTAATTCTGGAGAAAGAGTAATGGTTTTAGAAGAATCTGAAATGTTAAGTCATGAAAACTTTGGAGGCACAGAAGAAACTCCTCAAAAATCTGTTACCTCTAAGTCTATTGTATATAAGAGTCCCCACACTACTATTTATAATGTAAAGGAAGCCAAAGATCCAGGTTCAGATACTTTTGGCTTTAAATTACCTGAACGTAAATCAAGTAATTTCAACAGTGTTAATTCCAATGTGTCTCATCCTTTAGTTTTGGGGAAACATCGTCTTTGTTTAGATGATAGTAAAAGGAATCCATCCAGTCCTCCACTTTTCCCACCAGCTAAAAAACAGACTTTCACTATTCATGAAGAAAAGCCTGCATCATCTAATGACTCCCCAGGAGCAATTTCTTCCTGGAAGATTCTCCCTTCTGTCTTAACTTCTACAGTTAATCTGCAAGAGCCTTGGAAGAGTAGAAAAATAACACCTCCTTTATGCAAGTGTGGCCGAAGATCTAAGAGACTTACTGTTTCTAATAATGGACCAAACCATGGAAAAGTCTTCTATTGTTGTCCTGTTGGGAAGTACCAAGAAAAGAGAAAATGTTGTGGCTATTTCAAGTGGGAACAAACACTTCAAGAGGAAAGAGCGAACAGTATAGTTCTATCTGATTCCCCAGGAGGACTCACTTTTAGTTCTTTAGAAACAAACCTTATTTGTGACAGAAATGTAAATTTCTCTACTAAAAATTCATTGAGACTCAGACCTTCAATGAGAAATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006448:ENSBTAT00000008456:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(5.8=36.7)
A:
NA
C2:
PF068397=zf-GRF=WD(100=11.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCCTTCTTGCTTGGAAA
R:
AGACCTGCTTTTATGCTGTCCT
Band lengths:
299-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]