GgaINT0012568 @ galGal3
Intron Retention
Gene
ENSGALG00000002214 | ERI2
Description
NA
Coordinates
chr14:15637813-15638517:-
Coord C1 exon
chr14:15638429-15638517
Coord A exon
chr14:15638243-15638428
Coord C2 exon
chr14:15637813-15638242
Length
186 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
TTTGTTAATGGACTCCCTAGTCC
3' ss Score
3.63
Exon sequences
Seq C1 exon
GGTTGGATGACTCTCGGAATACTGCTCGTCTTGCTTGGAGGCTGATTTGTGATGGGTGTGTGCTGAAGATTACTAAATCTTTGGATAAG
Seq A exon
GTTGGTTACTATTTCATATCTTTCCTCTGCTAGTCTTATCGTCTGAAATACAGGTGAAGGGTGAATCTTGAGTATGAACTGAACAGAATATCCTTAGGCTGATACACTTGTTAATTTTGTGCAGTGATTCTTAAAGTTTCTGGGTATTCACTTTCCAAAATCTCTTTTTGTTAATGGACTCCCTAG
Seq C2 exon
TCCTATCCTAGGAAGAACTTGATTTCCAGAACGCTGAATACCAACTCTGCTGACAAGACTCTGCCAGGAAGTAGCAGCAGCCTTGAAACATCCAGAGACAGAACTTGCAAAGCAAACTCTCTGACAGAGAGAAGCCACAATGGTACTGTTGGAATTGTGGTAAATTCTGATGTACAACCTGCAGGACAGGCCACTTGCAGTGATTGCTCTACAGACATGCATGTTGTATCCGGCAGCAGCTCAAGGACTGATCTGTGTGAAGAAACCCGAAGCTCTTCCACAGTATCTGCTGACAGATTTCCTCTTCTGGGATGTGCACAGCAATCTCACAGTACTTTATCACCAGGCATTCAGCAAGGATTGAACAGTGGGCATCTCATGAGCACAGGAAGGTACAGCTCTCCAGTGTGTGGGTCTGGACTAGTACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002214:ENSGALT00000003470:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(5.9=36.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTGCTTGGAGGCTGATT
R:
TGTCCTGCAGGTTGTACATCA
Band lengths:
251-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]