HsaEX0023356 @ hg19
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:3501]
Coordinates
chr1:93101759-93128422:-
Coord C1 exon
chr1:93128276-93128422
Coord A exon
chr1:93104672-93104794
Coord C2 exon
chr1:93101759-93101893
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTAATTTTTGCAACACCAGAAA
3' ss Score
2.86
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGACAAGTGACAAGAGCCCAGGAGGCTGAGGAAAACTACCTCATAAAACGGGAGTTGGCCACCATCAAACAGCAGAGTGATGAGGCCAGTGCTAAGCTGGAGCAAGCTGAAAATACCATCAGGAAGCTCCAGCACCAACAACAATGG
Seq A exon
AAAAGCACATAGGATTGAAAAGCAGACTCTGCTTACTAAAAAGAATTTCTGTCAGTTTCATTGGAATGGGATTGCTGGTATCACAGAAACATTATGAGATTCATTTACATAAATTAACTTGAT
Seq C2 exon
CATAAATGCAGTTCCAACTACAACGAAGATTTTGTGCTACAGCTAGAGAAGGAATTGGTCCAAGCCCGACTGAGTGAAGCTGAGTCTCAGTGTGCATTAAAAGAGATGCAGGATAAAGTCTTGGATATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-'22-27,'22-26,23-27
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.667 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF065706=DUF1129=PU(95.3=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGTGACAAGAGCCCAGG
R:
CCTGCATCTCTTTTAATGCACACTG
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)