HsaEX0023356 @ hg38
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr1:92636202-92662865:-
Coord C1 exon
chr1:92662719-92662865
Coord A exon
chr1:92639115-92639237
Coord C2 exon
chr1:92636202-92636336
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTAATTTTTGCAACACCAGAAA
3' ss Score
2.86
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGACAAGTGACAAGAGCCCAGGAGGCTGAGGAAAACTACCTCATAAAACGGGAGTTGGCCACCATCAAACAGCAGAGTGATGAGGCCAGTGCTAAGCTGGAGCAAGCTGAAAATACCATCAGGAAGCTCCAGCACCAACAACAATGG
Seq A exon
AAAAGCACATAGGATTGAAAAGCAGACTCTGCTTACTAAAAAGAATTTCTGTCAGTTTCATTGGAATGGGATTGCTGGTATCACAGAAACATTATGAGATTCATTTACATAAATTAACTTGAT
Seq C2 exon
CATAAATGCAGTTCCAACTACAACGAAGATTTTGTGCTACAGCTAGAGAAGGAATTGGTCCAAGCCCGACTGAGTGAAGCTGAGTCTCAGTGTGCATTAAAAGAGATGCAGGATAAAGTCTTGGATATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208_MULTIEX1-14/20=13-15
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=0.500 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF065706=DUF1129=PU(95.3=91.1)
Main Inclusion Isoform:
ENST00000491940fB2454
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGTGACAAGAGCCCAGG
R:
CCTGCATCTCTTTTAATGCACACTG
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development