HsaEX0025804 @ hg19
Exon Skipping
Gene
ENSG00000132436 | FIGNL1
Description
fidgetin-like 1 [Source:HGNC Symbol;Acc:13286]
Coordinates
chr7:50511831-50515987:-
Coord C1 exon
chr7:50515879-50515987
Coord A exon
chr7:50515666-50515753
Coord C2 exon
chr7:50511831-50514995
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGGTTCCTCTCACTTTGCAGATA
3' ss Score
11.37
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GATAGCAGCATCAAGGAGCATTGTGTACATGCAGAAGTGCACAGTACCTGGAGTGAAACTGCTTGTGTTCGATTTCTGATACCATTCATAACTGGCTGTGTGATCTCAA
Seq A exon
ATAAGAAAACTGAAGAACCAGCTGGGCGCGGTAGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATTACCTGAG
Seq C2 exon
AACCTCTAAAATGCAGACCTCCAGCTCTAGATCTGTGCACCTGAGTGAATGGCAGAAGAATTACTTCGCAATTACATCTGGCATATGTACCGGACCGAAGGCAGATGCATACCGTGCACAGATATTACGCATTCAGTATGCATGGGCAAACTCTGAGATTTCCCAGGTCTGTGCTACCAAACTGTTCAAAAAATATGCAGAGAAATATTCTGCAATTATTGATTCTGACAATGTTGAATCTGGGTTGAATAATTATGCAGAAAACATTTTAACTTTGGCAGGATCTCAACAAACAGATAGTGACAAGTGGCAGTCTGGATTGTCAATAAATAATGTTTTCAAAATGAGTAGTGTACAGAAGATGATGCAAGCTGGCAAAAAATTCAAAGACTCTCTGTTGGAACCTGCTCTTGCATCAGTGGTAATCCATAAGGAGGCCACTGTCTTTGATCTTCCTAAATTTAGTGTTTGTGGTAGTTCTCAAGAGAGTGACTCATTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132436_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000424=AAA=WD(100=19.4),PF093365=Vps4_C=WD(100=7.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCACAGTACCTGGAGTGA
R:
TGCCTTCGGTCCGGTACATAT
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)