HsaEX0025804 @ hg38
Exon Skipping
Gene
ENSG00000132436 | FIGNL1
Description
fidgetin like 1 [Source:HGNC Symbol;Acc:HGNC:13286]
Coordinates
chr7:50444128-50448289:-
Coord C1 exon
chr7:50448181-50448289
Coord A exon
chr7:50447968-50448055
Coord C2 exon
chr7:50444128-50447297
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGGTTCCTCTCACTTTGCAGATA
3' ss Score
11.37
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GATAGCAGCATCAAGGAGCATTGTGTACATGCAGAAGTGCACAGTACCTGGAGTGAAACTGCTTGTGTTCGATTTCTGATACCATTCATAACTGGCTGTGTGATCTCAA
Seq A exon
ATAAGAAAACTGAAGAACCAGCTGGGCGCGGTAGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATTACCTGAG
Seq C2 exon
AACCTCTAAAATGCAGACCTCCAGCTCTAGATCTGTGCACCTGAGTGAATGGCAGAAGAATTACTTCGCAATTACATCTGGCATATGTACCGGACCGAAGGCAGATGCATACCGTGCACAGATATTACGCATTCAGTATGCATGGGCAAACTCTGAGATTTCCCAGGTCTGTGCTACCAAACTGTTCAAAAAATATGCAGAGAAATATTCTGCAATTATTGATTCTGACAATGTTGAATCTGGGTTGAATAATTATGCAGAAAACATTTTAACTTTGGCAGGATCTCAACAAACAGATAGTGACAAGTGGCAGTCTGGATTGTCAATAAATAATGTTTTCAAAATGAGTAGTGTACAGAAGATGATGCAAGCTGGCAAAAAATTCAAAGACTCTCTGTTGGAACCTGCTCTTGCATCAGTGGTAATCCATAAGGAGGCCACTGTCTTTGATCTTCCTAAATTTAGTGTTTGTGGTAGTTCTCAAGAGAGTGACTCATTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132436-'13-20,'13-17,14-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000424=AAA=WD(100=19.4),PF093365=Vps4_C=WD(100=7.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCACAGTACCTGGAGTGA
R:
TGCCTTCGGTCCGGTACATAT
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development