HsaEX0026565 @ hg19
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005]
Coordinates
chr9:133456482-133470975:+
Coord C1 exon
chr9:133456482-133456900
Coord A exon
chr9:133469030-133469274
Coord C2 exon
chr9:133470870-133470975
Length
245 bp
Sequences
Splice sites
3' ss Seq
TGGTTGTTTATTTGTTTCAGGTA
3' ss Score
9.5
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
Exon sequences
Seq C1 exon
GTGACAGTCACCTTGTTGGCCTTCTATGTCCGGGAAGAATTATAGTCACTGCCCTAAAGGGCTCAGATCCTCAGTTTGCAGAAGGCCTGTAGTTGAACATAAAGTGAATTTTGAACCATTGAGAAGACATTCCGCTTCTCTTGAGCCAGTGGTTGAACTCATATTCTTGGACAACCTGCTCCAGAGGGAGACCCTCTGGTAAATGCTGACCTAATGTGGATTGTTGAAGCAGTGGTGTTTACTACTAGCAGTGAAAACTTCATTGGAATTGTTCTCAGCTCTGAAATGCACCATTGACTGGAGCAGTAATAAGCCCAATGGAGACAGGGCTGTAAGTGTGTTCCTTCTGAATGTTAACAGCTGGAGGTCCATACTATCTCCAAGGATTTGATGGCCTTTAAAAACTAAAGAAAAACCAG
Seq A exon
GTAATTTCTGTTGGTCCCAATAGGTGTGAGACTTCTGGGAACATTTGGACTAGCTCAGAACTACCACTGAAGACTTTGCTCTGGGGCACAGCTGTGCTAGCTGCCCCCAATAGACCCCTGTTTATTAACTTTAACTGAGGGACTAACATCAAGAGCAGTTGCTGTAAATATTCCTTTGGTTAAATGAAAGAGTTGCTTTATTATGAAGATCACATATAATTTCCTGCTGAGAACAAAGTAGATAA
Seq C2 exon
ATTGCTGCTAAAATTGATTCAATTCCTCACTTGAATAATTCCACACCTCTAGTGGACCCCTCAGTATATGGATACGGAGTACAAAAACGGCCCTTGGATGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-'1-3,'1-2,3-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCTGGTAAATGCTGACCT
R:
CTGAGGGGTCCACTAGAGGTG
Band lengths:
293-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)