HsaEX0026565 @ hg38
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr9:130579606-130595588:+
Coord C1 exon
chr9:130579606-130579764
Coord A exon
chr9:130593643-130593887
Coord C2 exon
chr9:130595483-130595588
Length
245 bp
Sequences
Splice sites
3' ss Seq
TGGTTGTTTATTTGTTTCAGGTA
3' ss Score
9.5
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
Exon sequences
Seq C1 exon
CGGGAGGCCGGACCGGGGAGCCGAGCGGCGGCGTCGGCGGCGTCGGCGGCGGCGGCGACGGCGGCGGGGGCGGTAATGGCGGAGCTGGTGCAGGGGCAGAGCGCTCCTGTGGGGATGAAGGCCGAGGGCTTCGTGGATGCCCTGCACCGGGTCCGGCAG
Seq A exon
GTAATTTCTGTTGGTCCCAATAGGTGTGAGACTTCTGGGAACATTTGGACTAGCTCAGAACTACCACTGAAGACTTTGCTCTGGGGCACAGCTGTGCTAGCTGCCCCCAATAGACCCCTGTTTATTAACTTTAACTGAGGGACTAACATCAAGAGCAGTTGCTGTAAATATTCCTTTGGTTAAATGAAAGAGTTGCTTTATTATGAAGATCACATATAATTTCCTGCTGAGAACAAAGTAGATAA
Seq C2 exon
ATTGCTGCTAAAATTGATTCAATTCCTCACTTGAATAATTCCACACCTCTAGTGGACCCCTCAGTATATGGATACGGAGTACAAAAACGGCCCTTGGATGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164_MULTIEX3-2/5=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000319725fB2831
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCGGTAATGGCGGAG
R:
CCATCATCCAAGGGCCGTTTT
Band lengths:
197-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development