HsaEX0026567 @ hg19
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005]
Coordinates
chr9:133485341-133487892:+
Coord C1 exon
chr9:133485341-133485374
Coord A exon
chr9:133485914-133485990
Coord C2 exon
chr9:133487843-133487892
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTTTCTGTGTCCCCTCATAGCCT
3' ss Score
8.66
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
TAGGTAACCAGTTAGGGGCCTTGGTACATCAAAG
Seq A exon
CCTTCTGTCAAACGTAGAAGATTTAGAGAGATACAGAAAGAGCCCTGAGTTTTACAAAGGCCAATCTGTAAGATGGG
Seq C2 exon
GACGGTAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001324=KH_1=PU(20.6=72.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTAACCAGTTAGGGGCCTT
R:
TCCAACCATTTTGTCAGGCACT
Band lengths:
79-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)