HsaEX0026567 @ hg38
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr9:130609954-130612505:+
Coord C1 exon
chr9:130609954-130609987
Coord A exon
chr9:130610527-130610603
Coord C2 exon
chr9:130612456-130612505
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTTTCTGTGTCCCCTCATAGCCT
3' ss Score
8.66
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
TAGGTAACCAGTTAGGGGCCTTGGTACATCAAAG
Seq A exon
CCTTCTGTCAAACGTAGAAGATTTAGAGAGATACAGAAAGAGCCCTGAGTTTTACAAAGGCCAATCTGTAAGATGGG
Seq C2 exon
GACGGTAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Inclusion Isoform:
ENST00000319725fB2833
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTAACCAGTTAGGGGCCTT
R:
TCCAACCATTTTGTCAGGCACT
Band lengths:
79-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development