HsaEX0027174 @ hg19
Exon Skipping
Gene
ENSG00000168505 | GBX2
Description
gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:4186]
Coordinates
chr2:237073879-237076652:-
Coord C1 exon
chr2:237076092-237076652
Coord A exon
chr2:237075781-237075817
Coord C2 exon
chr2:237073879-237075080
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGACGATGCGTTTGGCCGAGGCC
3' ss Score
-2.78
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GCTGATGATGATGCAGCGCCCGCTGGGGAGTAGCACCGCCTTCAGCATAGACTCGCTGATCGGCAGCCCGCCGCAGCCCAGCCCCGGCCATTTCGTCTACACCGGCTACCCCATGTTCATGCCCTACCGGCCGGTAGTGCTGCCGCCGCCGCCGCCGCCGCCGCCCGCGCTGCCCCAGGCCGCGCTGCAGCCAGCGCTGCCGCCCGCACACCCTCACCACCAGATCCCCAGCCTGCCCACAGGCTTCTGCTCCAGCCTGGCGCAGGGCATGGCGCTCACCTCTACGCTCATGGCCACGCTCCCCGGCGGCTTCTCCGCGTCGCCCCAGCACCAGGAGGCGGCAGCGGCCCGCAAGTTCGCGCCGCAGCCGCTGCCCGGCGGCGGTAACTTCGACAAGGCGGAGGCGCTGCAGGCTGACGCGGAGGACGGCAAAGGCTTCCTGGCCAAAGAGGGCTCGCTGCTCGCCTTCTCCGCGGCCGAGACGGTGCAGGCTTCGCTCG
Seq A exon
GCCGCCTCTGCCGCTCCGCGGTGACCTGGGGTTCCGG
Seq C2 exon
TCGGGGCTGTCCGAGGGCAAGGGAAAGACGAGTCAAAGGTGGAAGACGACCCGAAGGGCAAGGAGGAGAGCTTCTCGCTGGAGAGCGATGTGGACTACAGCTCGGATGACAATCTGACTGGCCAGGCAGCTCACAAGGAGGAAGACCCGGGCCACGCGCTGGAGGAGACCCCGCCGAGCAGCGGCGCCGCGGGCAGCACCACGTCTACGGGCAAGAACCGGCGGCGGCGGACTGCCTTCACCAGCGAGCAGCTGCTGGAGCTAGAGAAGGAGTTCCACTGCAAAAAGTACCTCTCCTTGACCGAGCGCTCGCAGATCGCCCACGCCCTCAAACTCAGCGAGGTGCAGGTGAAAATCTGGTTCCAGAACCGACGGGCCAAGTGGAAACGGGTGAAGGCAGGCAATGCCAATTCCAAGACAGGGGAGCCCTCCCGGAACCCTAAGATCGTCGTCCCCATCCCTGTCCACGTCAGCAGGTTCGCTATCAGAAGTCAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168505_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.648
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=WD(100=32.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCTGGCCAAAGAGGG
R:
GGGTCGTCTTCCACCTTTGAC
Band lengths:
118-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)