HsaEX0027174 @ hg38
Exon Skipping
Gene
ENSG00000168505 | GBX2
Description
gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]
Coordinates
chr2:236165236-236168369:-
Coord C1 exon
chr2:236167449-236168369
Coord A exon
chr2:236167138-236167174
Coord C2 exon
chr2:236165236-236166437
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGACGATGCGTTTGGCCGAGGCC
3' ss Score
-2.78
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GCTGATGATGATGCAGCGCCCGCTGGGGAGTAGCACCGCCTTCAGCATAGACTCGCTGATCGGCAGCCCGCCGCAGCCCAGCCCCGGCCATTTCGTCTACACCGGCTACCCCATGTTCATGCCCTACCGGCCGGTAGTGCTGCCGCCGCCGCCGCCGCCGCCGCCCGCGCTGCCCCAGGCCGCGCTGCAGCCAGCGCTGCCGCCCGCACACCCTCACCACCAGATCCCCAGCCTGCCCACAGGCTTCTGCTCCAGCCTGGCGCAGGGCATGGCGCTCACCTCTACGCTCATGGCCACGCTCCCCGGCGGCTTCTCCGCGTCGCCCCAGCACCAGGAGGCGGCAGCGGCCCGCAAGTTCGCGCCGCAGCCGCTGCCCGGCGGCGGTAACTTCGACAAGGCGGAGGCGCTGCAGGCTGACGCGGAGGACGGCAAAGGCTTCCTGGCCAAAGAGGGCTCGCTGCTCGCCTTCTCCGCGGCCGAGACGGTGCAGGCTTCGCTCG
Seq A exon
GCCGCCTCTGCCGCTCCGCGGTGACCTGGGGTTCCGG
Seq C2 exon
TCGGGGCTGTCCGAGGGCAAGGGAAAGACGAGTCAAAGGTGGAAGACGACCCGAAGGGCAAGGAGGAGAGCTTCTCGCTGGAGAGCGATGTGGACTACAGCTCGGATGACAATCTGACTGGCCAGGCAGCTCACAAGGAGGAAGACCCGGGCCACGCGCTGGAGGAGACCCCGCCGAGCAGCGGCGCCGCGGGCAGCACCACGTCTACGGGCAAGAACCGGCGGCGGCGGACTGCCTTCACCAGCGAGCAGCTGCTGGAGCTAGAGAAGGAGTTCCACTGCAAAAAGTACCTCTCCTTGACCGAGCGCTCGCAGATCGCCCACGCCCTCAAACTCAGCGAGGTGCAGGTGAAAATCTGGTTCCAGAACCGACGGGCCAAGTGGAAACGGGTGAAGGCAGGCAATGCCAATTCCAAGACAGGGGAGCCCTCCCGGAACCCTAAGATCGTCGTCCCCATCCCTGTCCACGTCAGCAGGTTCGCTATCAGAAGTCAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168505_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.513 A=0.000 C2=0.642
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=WD(100=32.6)


Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCTGGCCAAAGAGGG
R:
GGGTCGTCTTCCACCTTTGAC
Band lengths:
118-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development