HsaEX0027618 @ hg38
Exon Skipping
Gene
ENSG00000250571 | GLI4
Description
GLI family zinc finger 4 [Source:HGNC Symbol;Acc:HGNC:4320]
Coordinates
chr8:143269360-143273383:+
Coord C1 exon
chr8:143269360-143269520
Coord A exon
chr8:143272396-143272474
Coord C2 exon
chr8:143273091-143273383
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATACACAAAGGCCCTTCCAGCCA
3' ss Score
-4.03
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTCCCAGGTGTGACACCTTCAGCAGGTCTCAGGGAAGATGGCAGCCCTAGGGGACATTCAGGAGTCCCCTTCTGTCCCGTCCCCTGTCAGTCTCTCATCACCGGGGACACCTGGAACCCAGCACCACGAGCCTCAGCTTCACCTCCATGGGCATCAACATG
Seq A exon
CCAGGAAAGCACCCACCTGCCGCCTGTCCCCAGACGTGTACAGCCACCTCACCTCCACTTGGAAGACCAGCCCCAGCAG
Seq C2 exon
GGCTGCCAGGTCCTCTCCAGTGGTGTCCCAGCGCAGGGCAAAGGTGGCAAGGCTGTCTCAGGTGATGTCCTCACCGCCCCCTCTGTAGGAGCATGGCGCTGGAGCCTGCCCTGTATTTGGCCATCTGTGGAACAAGCCAGCTCCCCTGGCTGCCAGGGGATGGTGACATGGTGCCCCCAGGCCTGTCTCCACAATGGGGAGGGTATCCGAAAGACCCAAAGATGGTTTGGGACCCCCACATCCTGCTTTGGGGCAGCCAAGCAGTTCTGGACCCTCGGCTCTCGAGGAAGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250571-'6-10,'6-8,8-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.556 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGGAGTCCCCTTCTGTCC
R:
CATCACCTGAGACAGCCTTGC
Band lengths:
172-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development