HsaINT0069496 @ hg38
Intron Retention
Gene
ENSG00000250571 | GLI4
Description
GLI family zinc finger 4 [Source:HGNC Symbol;Acc:HGNC:4320]
Coordinates
chr8:143269358-143274802:+
Coord C1 exon
chr8:143269358-143269520
Coord A exon
chr8:143269521-143274703
Coord C2 exon
chr8:143274704-143274802
Length
5183 bp
Sequences
Splice sites
5' ss Seq
ATGGTACTC
5' ss Score
3.28
3' ss Seq
CCAGCCTCCCTGACCCCCAGGCT
3' ss Score
6.64
Exon sequences
Seq C1 exon
AGGTCCCAGGTGTGACACCTTCAGCAGGTCTCAGGGAAGATGGCAGCCCTAGGGGACATTCAGGAGTCCCCTTCTGTCCCGTCCCCTGTCAGTCTCTCATCACCGGGGACACCTGGAACCCAGCACCACGAGCCTCAGCTTCACCTCCATGGGCATCAACATG
Seq A exon
GTACTCACCCAGCCCGCTGTGCGCCCTCCACCCTGCATCCCCTGCCCTCACGTCCCCTGCCCTGTCTCCTCCTGACCTGCCACGCTGGCTGACTTGAGAGGCGCCTCCAGACACCTGTATGCAGCTCCTTCAGCAGCTGGGGTTCCCACACCCTCAGGCCAGGGGCTCGGCGCGGGTTGGGTTGGGGCAGCGGTGGTTGAGGCTGGGGCCAAGCCTGAGCTCTCGCTCCCTAGGGACAGCTCCCCGCATTGTTTCTTTCCTGAGTTGAGGTATAGGAGGGAAAGTGGCCTCAAAATCTGGATCCAGCGTGACCAGGAGCAAGGCATCGCCCCTCTGAGTGTGTGTTGTCATTCAGGAAGTGGAGCAGCCAGAGTCCTTGCCAAGCTGGTTTGGGTGTGATCCCCCGGGACTCGCAGGGACAGAGCGCCAGCCTTGCTCCACCCCTGATGTTGTGGCCTCATGGTCACATGGCAGGCTCTGGGAGTTGAGGTGTGGGGGAGTCCCAGCCCCATAGTGCCCCTGGCTCTACTCCCTCTCAGAGGTCAGGGATCCTGAGGCTACATCTCTGCTGGGTGTTCCACAGGAGGCCTGGCCTCGGCCCTCGTGGCCCAACCCAGCACATGAGCTGCTGACAGCAGGGGCAAGGCCCCATATAGGTCAAGCCTGGAGAGCCCGTGCCTGGCCCAGGAATGGGGGCAACCTGGCACAGGGTTCTCCCTCTTGGGGAGTCAGAGTCCTGGTGGCTGAAGGGACCACTGAGGCTTGTGGAGAGCAGCTGCGCTGCATGGGGCCCTCAGGTGGGCACTCAGATGGGGACAGAGAGTCCGGGGGGCTCCCCCAAGGAGCCAGGACCAGGGTGAGTTAGAGGAGCAGGGAGCCAGGCAGCTTGGCATCCACTCCCCTGCAGCCCTGCCGTCTCCGCTGCGGTGTCCCGAGCAACTCCCCAGGGACTGCGAGGAGGCTGGGAAGGGGCGCCCGTGGGCTGCCTGGGCTGCCTGTCCTGGTGGACCTGGCCAGGGGCTACCTGGAAGGATCCCAAGCCCCTGCAGCACACACTGTGGCTGGGCCTCCAGCCCATGCCCCTGAGGGCCGTGCTCCTCACCCCTTAGTCAGAATCTCAGGGCCCACCCTTGCCCTCTCATGTCATCTGTACAATGGCTGAGAGGAGTTCTCCTGTCCCGTTACCAGTGGGGACACAGAAGCCCAGAGACAAGGCCAGGAGGTCAGCAGACTCAGGGCATGCCCTGGCACCCCCCCAGGCCTGATGAGGTGTGACTTCTCTAGGGGGACAGTTTCTGAGGGAGGGCACAGCCCAGCAGATCATCTTGGCACAGCACAGGACACACACTGAGGTGGCTGCAGGCCAGTTTCTGCAGGATAAGAAACTGACGCCCAGGTGGAGGGTGGGCTGGGGAGCATGGAGGGGCCTGGGGCCAGGCCCCCTGAGCCTGCAGGGTTGCGCTACCCCCAGCCCTGTCTCCACCAGCTGTGGGCAGCCAGGCCCAGAAAGCCAGGCATGAGTCCCCAGCCCCACAGGCCTGGAAGCCTCCTGGGCACTGGAGCCATGTCCGAGTGCCCTGAAACCCCCAGGGGTTTTGCCCCGTGGGAGGGAGTGGGGGCTGCACCAGCAGCTTCTGCCGTCTCCTTGCTGTGCTAGAAACAACATCCAGGGAGGACAGATGAGCTGGGCCCTGAGAACAGCAAGTGTGGCTGCTTTCCCCCAGCAAGAGACTGTGGCAGGAGGAGATTGTGGCTGAGGCACAGCGGGGCCTGGGAAGGCTGTCAGGTAGCCAGAGCCAGATAAGGGGGCGGCCTTCATCCCCTCTTCATGCTGATAGGCCTGGTGTAGAGAGAACGGGGCCAGGCCGCAGCAATGGGCAGCTACTGTCCCAACTTCCAGGCACTGGGTGAAGGCAGGGGCTGTTTCTGGGCGTTTCCAGCTTCCTCTGCTCCTTGGGAATGCCCAGGGGCCACAGATTCCTAAGCAGGGGAGACCTCGCTGTTTCTGGAACTTGCCCAGGGCCATCCTGCCAATTAGGGATCAAGACAGGACTTGGAGCCGCAGCCTCCCAACTCCCAGAAAGAAGTTTGCAGTGGGCCAGACCGAGGTTCCTGGGGCCCACCCCAGGCACATGTGGTCACCTCAGGAGCCTCTGGTGGGTGCGTTGCTGGGCACCAGGCCGTGACGTATCAGGGAGCAGAGGAGGTCCCAAGTAGGAGCCGTTTATCAGTGGGGAGGGTCGTGAGGGGCATGAGGAGCGGCCGGGTAAGGTTCTCTGCGGTGGTCCCTGCAGCCATGAAGCTGGGGTCCCACAGCAAAGGACTTGGGGCCATGGCCTAGCCCAAGCCTTGCAGAGCGGGGAGACCAGGCGGTGGGAACAGGCCACAGTTCCTCATCTCCCAGGACCTCTGTGGTCCCCACGGAGATGCAGATCAGGAGCTGGGCTGGGCTTGGGGGACTGAGGGTCCCCACACAGCTTCTCAGGGATTGTGTTGTGCCCCAAGGCCACGCCCACCAGAGCCAGCACTGCCTGGGCCGGTTCTGGAAGGTTTACCCAGGGGTCCTGCGAGTGGAGGGGCAGTCTGGGCAGGAAGAAGTGAGGGAGGGGAGGCCTGGGACCCTTGGGGGCTTGCAGCCCTGTGGGGGTTACTGAGTGCCCAGGCTGTTAGGGAGGACCCCATGGGCAGGGCAGGGCCACCCCGCGACAGGCACAGCATCTTTCCACATGGAGCGCCTGGCCTTGGCACCTGAGATCTGGACTCTAGGTTCCCACAGACCACCCCCCAGCGCCTAGCTTGCTCCCCTAACTCACCCTGGTCCAGGCCCGGGCACACAGCACTTGCTGTGCCATTTAATACACAAAGGCCCTTCCAGCCAGGAAAGCACCCACCTGCCGCCTGTCCCCAGACGTGTACAGCCACCTCACCTCCACTTGGAAGACCAGCCCCAGCAGGTGGGCAGCCCTGGTGTTTCTCCAGTTCGGGCCACACTGTCCCTGTGTCACAGCACAGTGGGAGGGCACTGGCCAGGTGAGGGGTGGTGAAACTGAGGCAGGGGTACTTCTGCATAGAGCCAGCAGGGTGGGGAGCAGGGTCTGGGTGTGCACCCTGTGGAGACCTGGCACAGCCTGGGCACAGCCAGCAGGTGGCAGGTGACTGAGCTCTGCAGAAATGGCCCGAATGTGGGCAGGTGTCAGGATCCAGGGTTAGGCAGTGGAATGACAGTGACCCATGCAGCCCACACCTGACCCTAGGCCACCCCCATCCTCCCCTAGAGAAGGTCCTAGGAAGTGCTTTGCTGCCTGCACAGGGCAGTTCCCAGGGAGCTGGGGGCCATCCTGAGTCGGCTTGTTCCGCAGCAGGGTAGAGACGGTGCACACCACCTGGCGTTGCTTGACTCTGAGGGTGTCTCCGGGCACCCCTACAGCTGGCAGCGGCTTTGGCGTGCTTCCTATCTTGGTAATGTCACTGGCCCTCTTAAAGTGACAGCCCGGGGAACATCCTGCCTGTCAGTGCCAGGGCATGGCCCCAGGAACAAAGCTGGAATCGGGGTCACTTTCTTTCTCAAAGGGCTGCCAGGTCCTCTCCAGTGGTGTCCCAGCGCAGGGCAAAGGTGGCAAGGCTGTCTCAGGTGATGTCCTCACCGCCCCCTCTGTAGGAGCATGGCGCTGGAGCCTGCCCTGTATTTGGCCATCTGTGGAACAAGCCAGCTCCCCTGGCTGCCAGGGGATGGTGACATGGTGCCCCCAGGCCTGTCTCCACAATGGGGAGGGTATCCGAAAGACCCAAAGATGGTTTGGGACCCCCACATCCTGCTTTGGGGCAGCCAAGCAGTTCTGGACCCTCGGCTCTCGAGGAAGGGACGTCGCACAGCCGCCCCCACCTGCTGAACTTCCCAGCCCTTCATATCGGGCCTCCCCTCACTCCTCAGCCTGGGTTCGGAAGGTCTCCCAGGGGCCGACCTGAGGGCGGGAGGGCGTGTCGGGTGAGTGAGTGGCTGGCTGGACTGGGGAGGTCCCCCCTCCATGGTGGGCCAAGCTGGTCACCCCACCGCAGCTGGGGCAGGCCTGCCTGAGGCTGGAAAGCCCCATGAAAAGCTCACAGCCAGGCACTGTTATGAACGGGGTGTCACAGCCAGGCACTGTGTTATGAACAGGGTGTGGACAGGAGCCTCTGCCCACCCCAGCCCTGCGTCTTTCTGTGCCCATCTCTGCATTGTCATTGCTGGGGACACCCAGATTCGGCCTCACGGGGCTAAGAGACACACCCGTCCTTGAGTACAGCCCCCAGCCACCCTCTCTGCTGTGGGCAGAGGGCAGGTGAGGCACCAGGGTGGCACAGCACTGAGGGGGCAGGTGAGGCACCAAGGTGGCACAGCACTGAGGAGACAGGTGAGACCCCCAAAGGGGCCTGGTGCCCCTGCTGGCGTGAGGAGAGCTGACCACTGGCCTCGGGCAGTGGAGCCCACGCCCCTCCCTTTTCAGTCTGTGCTCCTTGAGCATTAAGGCCATCCCCCCACCCTGCCCCCACCAAGTCTTGGGTGGGAGGGGGGTCTTGGTCCTGGGTGCCCAAGCCTGGTGTGCCCAGGGGTGAGGGGCTCATAGATGGGCCCAGCCCATTCCTCAGGCTCTGCCTGAGGAAGCCAGGGGCCAGTGCGCTGGGCCTGCTGGAAGCAGCTGCCTCTGCTGTTTCTGGGCGCTCGTCAAGGACAGCAGAGAGCCCCGGAGGGACAGAAAGGTCTGGGGCCAAGGCAGGAAGGCTTTGTGAGGTACGGGTGTGGGAGCCTGCAGGGCCAGCACTTTGAGAGGCCGGTCCAGAGCAGCACTGCAGGATGCTGGGGCATGGAGGAGGGTGGGCCACAGCCCACCAAGGTGACAAAGCCGCCTTCAACGGCAGGAGGGCCGCTTCAAAGCTCCCCCAGGTTTTGGCTCTGCTTACTGGGCTGAAGGGGAATGAGCTCCCAATGCTGGCCCCTGGAGGAGGAGGCTCTTGAACCGAGCTGGGAAGGAAGGTAAAGGGCATTCGTGGCTAGAGAAGCCCAAGCAGCGGGCCTGCTGTTGGGATTGGGAGGGCCAGGAGGTGTCCTGTGTCAGGGCCACAGCCCGGGAGCACGTGGCGGTCAGAGAGGAGCGGAGGCAGTGGTCCAGAGGGTGGAGGTGAGCCCCAGCCTCCCTGACCCCCAG
Seq C2 exon
GCTCCCCTGGCTCCAGCCCTAAGGTGCTCTCCCAGCCGTCCGACCTGGATCTCCAAGACGTAGAGGAAGTGGAGATCGGCAGAGACACCTTCTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250571:ENST00000523522:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.902
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development