HsaINT0069496 @ hg19
Intron Retention
Gene
ENSG00000250571 | GLI4
Description
GLI family zinc finger 4 [Source:HGNC Symbol;Acc:4320]
Coordinates
chr8:144351530-144356972:+
Coord C1 exon
chr8:144351530-144351690
Coord A exon
chr8:144351691-144356873
Coord C2 exon
chr8:144356874-144356972
Length
5183 bp
Sequences
Splice sites
5' ss Seq
ATGGTACTC
5' ss Score
3.28
3' ss Seq
CCAGCCTCCCTGACCCCCAGGCT
3' ss Score
6.64
Exon sequences
Seq C1 exon
GTCCCAGGTGTGACACCTTCAGCAGGTCTCAGGGAAGATGGCAGCCCTAGGGGACATTCAGGAGTCCCCTTCTGTCCCGTCCCCTGTCAGTCTCTCATCACCAGGGACACCTGGAACCCAGCACCACGAGCCTCAGCTTCACCTCCATGGGCATCAACATG
Seq A exon
GTACTCACCCAGCCCGCTGTGCGCCCTCCACCCTGCATCCCCTGCCCTCACGTCCCCTGCCCTGTCTCCTCCTGACCTGCCACGCTGGCTGACTTGAGAGGCGCCTCCAGACACCTGTATGCAGCTCCTTCAGCAGCTGGGGTTCCCACACCCTCAGGCCAGGGGCTCGGCGCGGGTTGGGTTGGGGCAGCGGTGGTTGAGGCTGGGGCCAAGCCTGAGCTCTCGCTCCCTAGGGACAGCTCCCCGCATTGTTTCTTTCCTGAGTTGAGGTATAGGAGGGAAAGTGGCCTCAAAATCTGGATCCAGCGTGACCAGGAGCAAGGCATCGCCCCTCTGAGTGTGTGTTGTCATTCAGGAAGTGGAGCAGCCAGAGTCCTTGCCAAGCTGGTTTGGGTGTGATCCCCCGGGACTCGCAGGGACAGAGCGCCAGCCTTGCTCCACCCCTGATGTTGTGGCCTCATGGTCACATGGCAGGCTCTGGGAGTTGAGGTGTGGGGGAGTCCCAGCCCCATAGTGCCCCTGGCTCTACTCCCTCTCAGAGGTCAGGGATCCTGAGGCTACATCTCTGCTGGGTGTTCCACAGGAGGCCTGGCCTCGGCCCTCGTGGCCCAACCCAGCACATGAGCTGCTGACAGCAGGGGCAAGGCCCCATATAGGTCAAGCCTGGAGAGCCCGTGCCTGGCCCAGGAATGGGGGCAACCTGGCACAGGGTTCTCCCTCTTGGGGAGTCAGAGTCCTGGTGGCTGAAGGGACCACTGAGGCTTGTGGAGAGCAGCTGCGCTGCATGGGGCCCTCAGGTGGGCACTCAGATGGGGACAGAGAGTCCGGGGGGCTCCCCCAAGGAGCCAGGACCAGGGTGAGTTAGAGGAGCAGGGAGCCAGGCAGCTTGGCATCCACTCCCCTGCAGCCCTGCCGTCTCCGCTGCGGTGTCCCGAGCAACTCCCCAGGGACTGCGAGGAGGCTGGGAAGGGGCGCCCGTGGGCTGCCTGGGCTGCCTGTCCTGGTGGACCTGGCCAGGGGCTACCTGGAAGGATCCCAAGCCCCTGCAGCACACACTGTGGCTGGGCCTCCAGCCCATGCCCCTGAGGGCCGTGCTCCTCACCCCTTAGTCAGAATCTCAGGGCCCACCCTTGCCCTCTCATGTCATCTGTACAATGGCTGAGAGGAGTTCTCCTGTCCCGTTACCAGTGGGGACACAGAAGCCCAGAGACAAGGCCAGGAGGTCAGCAGACTCAGGGCATGCCCTGGCACCCCCCCAGGCCTGATGAGGTGTGACTTCTCTAGGGGGACAGTTTCTGAGGGAGGGCACAGCCCAGCAGATCATCTTGGCACAGCACAGGACACACACTGAGGTGGCTGCAGGCCAGTTTCTGCAGGATAAGAAACTGACGCCCAGGTGGAGGGTGGGCTGGGGAGCATGGAGGGGCCTGGGGCCAGGCCCCCTGAGCCTGCAGGGTTGCGCTACCCCCAGCCCTGTCTCCACCAGCTGTGGGCAGCCAGGCCCAGAAAGCCAGGCATGAGTCCCCAGCCCCACAGGCCTGGAAGCCTCCTGGGCACTGGAGCCATGTCCGAGTGCCCTGAAACCCCCAGGGGTTTTGCCCCGTGGGAGGGAGTGGGGGCTGCACCAGCAGCTTCTGCCGTCTCCTTGCTGTGCTAGAAACAACATCCAGGGAGGACAGATGAGCTGGGCCCTGAGAACAGCAAGTGTGGCTGCTTTCCCCCAGCAAGAGACTGTGGCAGGAGGAGATTGTGGCTGAGGCACAGCGGGGCCTGGGAAGGCTGTCAGGTAGCCAGAGCCAGATAAGGGGGCGGCCTTCATCCCCTCTTCATGCTGATAGGCCTGGTGTAGAGAGAACGGGGCCAGGCCGCAGCAATGGGCAGCTACTGTCCCAACTTCCAGGCACTGGGTGAAGGCAGGGGCTGTTTCTGGGCGTTTCCAGCTTCCTCTGCTCCTTGGGAATGCCCAGGGGCCACAGATTCCTAAGCAGGGGAGACCTCGCTGTTTCTGGAACTTGCCCAGGGCCATCCTGCCAATTAGGGATCAAGACAGGACTTGGAGCCGCAGCCTCCCAACTCCCAGAAAGAAGTTTGCAGTGGGCCAGACCGAGGTTCCTGGGGCCCACCCCAGGCACATGTGGTCACCTCAGGAGCCTCTGGTGGGTGCGTTGCTGGGCACCAGGCCGTGACGTATCAGGGAGCAGAGGAGGTCCCAAGTAGGAGCCGTTTATCAGTGGGGAGGGTCGTGAGGGGCATGAGGAGCGGCCGGGTAAGGTTCTCTGCGGTGGTCCCTGCAGCCATGAAGCTGGGGTCCCACAGCAAAGGACTTGGGGCCATGGCCTAGCCCAAGCCTTGCAGAGCGGGGAGACCAGGCGGTGGGAACAGGCCACAGTTCCTCATCTCCCAGGACCTCTGTGGTCCCCACGGAGATGCAGATCAGGAGCTGGGCTGGGCTTGGGGGACTGAGGGTCCCCACACAGCTTCTCAGGGATTGTGTTGTGCCCCAAGGCCACGCCCACCAGAGCCAGCACTGCCTGGGCCGGTTCTGGAAGGTTTACCCAGGGGTCCTGCGAGTGGAGGGGCAGTCTGGGCAGGAAGAAGTGAGGGAGGGGAGGCCTGGGACCCTTGGGGGCTTGCAGCCCTGTGGGGGTTACTGAGTGCCCAGGCTGTTAGGGAGGACCCCATGGGCAGGGCAGGGCCACCCCGCGACAGGCACAGCATCTTTCCACATGGAGCGCCTGGCCTTGGCACCTGAGATCTGGACTCTAGGTTCCCACAGACCACCCCCCAGCGCCTAGCTTGCTCCCCTAACTCACCCTGGTCCAGGCCCGGGCACACAGCACTTGCTGTGCCATTTAATACACAAAGGCCCTTCCAGCCAGGAAAGCACCCACCTGCCGCCTGTCCCCAGACGTGTACAGCCACCTCACCTCCACTTGGAAGACCAGCCCCAGCAGGTGGGCAGCCCTGGTGTTTCTCCAGTTCGGGCCACACTGTCCCTGTGTCACAGCACAGTGGGAGGGCACTGGCCAGGTGAGGGGTGGTGAAACTGAGGCAGGGGTACTTCTGCATAGAGCCAGCAGGGTGGGGAGCAGGGTCTGGGTGTGCACCCTGTGGAGACCTGGCACAGCCTGGGCACAGCCAGCAGGTGGCAGGTGACTGAGCTCTGCAGAAATGGCCCGAATGTGGGCAGGTGTCAGGATCCAGGGTTAGGCAGTGGAATGACAGTGACCCATGCAGCCCACACCTGACCCTAGGCCACCCCCATCCTCCCCTAGAGAAGGTCCTAGGAAGTGCTTTGCTGCCTGCACAGGGCAGTTCCCAGGGAGCTGGGGGCCATCCTGAGTCGGCTTGTTCCGCAGCAGGGTAGAGACGGTGCACACCACCTGGCGTTGCTTGACTCTGAGGGTGTCTCCGGGCACCCCTACAGCTGGCAGCGGCTTTGGCGTGCTTCCTATCTTGGTAATGTCACTGGCCCTCTTAAAGTGACAGCCCGGGGAACATCCTGCCTGTCAGTGCCAGGGCATGGCCCCAGGAACAAAGCTGGAATCGGGGTCACTTTCTTTCTCAAAGGGCTGCCAGGTCCTCTCCAGTGGTGTCCCAGCGCAGGGCAAAGGTGGCAAGGCTGTCTCAGGTGATGTCCTCACCGCCCCCTCTGTAGGAGCATGGCGCTGGAGCCTGCCCTGTATTTGGCCATCTGTGGAACAAGCCAGCTCCCCTGGCTGCCAGGGGATGGTGACATGGTGCCCCCAGGCCTGTCTCCACAATGGGGAGGGTATCCGAAAGACCCAAAGATGGTTTGGGACCCCCACATCCTGCTTTGGGGCAGCCAAGCAGTTCTGGACCCTCGGCTCTCGAGGAAGGGACGTCGCACAGCCGCCCCCACCTGCTGAACTTCCCAGCCCTTCATATCGGGCCTCCCCTCACTCCTCAGCCTGGGTTCGGAAGGTCTCCCAGGGGCCGACCTGAGGGCGGGAGGGCGTGTCGGGTGAGTGAGTGGCTGGCTGGACTGGGGAGGTCCCCCCTCCATGGTGGGCCAAGCTGGTCACCCCACCGCAGCTGGGGCAGGCCTGCCTGAGGCTGGAAAGCCCCATGAAAAGCTCACAGCCAGGCACTGTTATGAACGGGGTGTCACAGCCAGGCACTGTGTTATGAACAGGGTGTGGACAGGAGCCTCTGCCCACCCCAGCCCTGCGTCTTTCTGTGCCCATCTCTGCATTGTCATTGCTGGGGACACCCAGATTCGGCCTCACGGGGCTAAGAGACACACCCGTCCTTGAGTACAGCCCCCAGCCACCCTCTCTGCTGTGGGCAGAGGGCAGGTGAGGCACCAGGGTGGCACAGCACTGAGGGGGCAGGTGAGGCACCAAGGTGGCACAGCACTGAGGAGACAGGTGAGACCCCCAAAGGGGCCTGGTGCCCCTGCTGGCGTGAGGAGAGCTGACCACTGGCCTCGGGCAGTGGAGCCCACGCCCCTCCCTTTTCAGTCTGTGCTCCTTGAGCATTAAGGCCATCCCCCCACCCTGCCCCCACCAAGTCTTGGGTGGGAGGGGGGTCTTGGTCCTGGGTGCCCAAGCCTGGTGTGCCCAGGGGTGAGGGGCTCATAGATGGGCCCAGCCCATTCCTCAGGCTCTGCCTGAGGAAGCCAGGGGCCAGTGCGCTGGGCCTGCTGGAAGCAGCTGCCTCTGCTGTTTCTGGGCGCTCGTCAAGGACAGCAGAGAGCCCCGGAGGGACAGAAAGGTCTGGGGCCAAGGCAGGAAGGCTTTGTGAGGTACGGGTGTGGGAGCCTGCAGGGCCAGCACTTTGAGAGGCCGGTCCAGAGCAGCACTGCAGGATGCTGGGGCATGGAGGAGGGTGGGCCACAGCCCACCAAGGTGACAAAGCCGCCTTCAACGGCAGGAGGGCCGCTTCAAAGCTCCCCCAGGTTTTGGCTCTGCTTACTGGGCTGAAGGGGAATGAGCTCCCAATGCTGGCCCCTGGAGGAGGAGGCTCTTGAACCGAGCTGGGAAGGAAGGTAAAGGGCATTCGTGGCTAGAGAAGCCCAAGCAGCGGGCCTGCTGTTGGGATTGGGAGGGCCAGGAGGTGTCCTGTGTCAGGGCCACAGCCCGGGAGCACGTGGCGGTCAGAGAGGAGCGGAGGCAGTGGTCCAGAGGGTGGAGGTGAGCCCCAGCCTCCCTGACCCCCAG
Seq C2 exon
GCTCCCCTGGCTCCAGCCCTAAGGTGCTCTCCCAGCCGTCCGACCTGGATCTCCAAGACGTAGAGGAAGTGGAGATCGGCAGAGACACCTTCTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250571-GLI4:NM_138465:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.902
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)