HsaALTA0003667-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000250571 | GLI4
Description
GLI family zinc finger 4 [Source:HGNC Symbol;Acc:4320]
Coordinates
chr8:144351530-144356972:+
Coord C1 exon
chr8:144351530-144351690
Coord A exon
NA
Coord C2 exon
chr8:144356890-144356972
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTACTC
5' ss Score
3.28
3' ss Seq
CCAGGCTCCCCTGGCTCCAGCCC
3' ss Score
3.45
Exon sequences
Seq C1 exon
GTCCCAGGTGTGACACCTTCAGCAGGTCTCAGGGAAGATGGCAGCCCTAGGGGACATTCAGGAGTCCCCTTCTGTCCCGTCCCCTGTCAGTCTCTCATCACCAGGGACACCTGGAACCCAGCACCACGAGCCTCAGCTTCACCTCCATGGGCATCAACATG
Seq A exon
NA
Seq C2 exon
CCCTAAGGTGCTCTCCCAGCCGTCCGACCTGGATCTCCAAGACGTAGAGGAAGTGGAGATCGGCAGAGACACCTTCTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250571-1-11,1-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.916
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCTCCATGGGCATCAAC
R:
CAGAAGGTGTCTCTGCCGATC
Band lengths:
102-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)