HsaEX0028071 @ hg19
Exon Skipping
Gene
ENSG00000169347 | GP2
Description
glycoprotein 2 (zymogen granule membrane) [Source:HGNC Symbol;Acc:4441]
Coordinates
chr16:20334191-20335578:-
Coord C1 exon
chr16:20335138-20335578
Coord A exon
chr16:20334703-20334711
Coord C2 exon
chr16:20334191-20334301
Length
9 bp
Sequences
Splice sites
3' ss Seq
TCATTTGATCCTCTCCCCAGTTC
3' ss Score
9.12
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTATGGAAACCCCATTGAAGCCAGTTCGTATGGGCTGGACCTGGACTGCGGAGCTCCTGGCACCCCAGAGGCTCATGTCTGTTTTGACCCCTGTCAGAATTACACCCTCCTGGATGAACCCTTCCGAAGCACAGAGAACTCAGCAGGGTCCCAGGGGTGCGATAAAAACATGAGCGGCTGGTACCGCTTTGTAGGGGAAGGAGGAGTAAGGATGTCGGAGACCTGTGTCCAGGTGCACCGATGCCAGACAGACGCTCCCATGTGGCTGAATGGGACCCACCCTGCCCTTGGGGATGGCATCACCAACCACACTGCCTGTGCCCATTGGAGTGGCAACTGCTGTTTCTGGAAAACAGAGGTGCTGGTGAAGGCCTGCCCAGGCGGGTACCATGTGTACCGGTTGGAAGGCACTCCCTGGTGTAATCTGAGATACTGCACAG
Seq A exon
TTCCACGAG
Seq C2 exon
ACCCATCCACTGTGGAGGACAAGTGTGAGAAGGCCTGCCGCCCCGAGGAGGAGTGCCTTGCCCTCAACAGCACCTGGGGCTGTTTCTGCAGACAGGACCTCAATAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169347-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGTGTACCGGTTGGAAG
R:
GCAGGCCTTCTCACACTTGTC
Band lengths:
92-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)