HsaEX0028071 @ hg38
Exon Skipping
Gene
ENSG00000169347 | GP2
Description
glycoprotein 2 [Source:HGNC Symbol;Acc:HGNC:4441]
Coordinates
chr16:20322869-20326418:-
Coord C1 exon
chr16:20326256-20326418
Coord A exon
chr16:20323381-20323389
Coord C2 exon
chr16:20322869-20322979
Length
9 bp
Sequences
Splice sites
3' ss Seq
TCATTTGATCCTCTCCCCAGTTC
3' ss Score
9.12
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGGAAAGGATGGTGGGCTCTGGCCTCCTGTGGCTGGCCTTGGTCTCCTGCATTCTGACCCAGGCATCTGCAGTGCAGCGAGGTAAGTATTCTGCTCACCTGGCATCTCAGATGTCAAGGAAGACCTAGCAAGTGAGGATAGAAGTGCAGAGAAGGTGGCTCAG
Seq A exon
TTCCACGAG
Seq C2 exon
ACCCATCCACTGTGGAGGACAAGTGTGAGAAGGCCTGCCGCCCCGAGGAGGAGTGCCTTGCCCTCAACAGCACCTGGGGCTGTTTCTGCAGACAGGACCTCAATAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169347-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCTGGCATCTCAGATG
R:
ACACTTGTCCTCCACAGTGGA
Band lengths:
97-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development