HsaEX6042568 @ hg38
Exon Skipping
Gene
ENSG00000169347 | GP2
Description
glycoprotein 2 [Source:HGNC Symbol;Acc:HGNC:4441]
Coordinates
chr16:20322869-20326467:-
Coord C1 exon
chr16:20326338-20326467
Coord A exon
chr16:20323816-20324256
Coord C2 exon
chr16:20322869-20322979
Length
441 bp
Sequences
Splice sites
3' ss Seq
GCACTCTGTCACTTTCCCAGGTT
3' ss Score
8.25
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGCATGGGAAGTCTGCATACAGCAAAGTGACCTGCATGCCTCACCTTATGGAAAGGATGGTGGGCTCTGGCCTCCTGTGGCTGGCCTTGGTCTCCTGCATTCTGACCCAGGCATCTGCAGTGCAGCGAG
Seq A exon
GTTATGGAAACCCCATTGAAGCCAGTTCGTATGGGCTGGACCTGGACTGCGGAGCTCCTGGCACCCCAGAGGCTCATGTCTGTTTTGACCCCTGTCAGAATTACACCCTCCTGGATGAACCCTTCCGAAGCACAGAGAACTCAGCAGGGTCCCAGGGGTGCGATAAAAACATGAGCGGCTGGTACCGCTTTGTAGGGGAAGGAGGAGTAAGGATGTCGGAGACCTGTGTCCAGGTGCACCGATGCCAGACAGACGCTCCCATGTGGCTGAATGGGACCCACCCTGCCCTTGGGGATGGCATCACCAACCACACTGCCTGTGCCCATTGGAGTGGCAACTGCTGTTTCTGGAAAACAGAGGTGCTGGTGAAGGCCTGCCCAGGCGGGTACCATGTGTACCGGTTGGAAGGCACTCCCTGGTGTAATCTGAGATACTGCACAG
Seq C2 exon
ACCCATCCACTGTGGAGGACAAGTGTGAGAAGGCCTGCCGCCCCGAGGAGGAGTGCCTTGCCCTCAACAGCACCTGGGGCTGTTTCTGCAGACAGGACCTCAATAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169347-'6-11,'6-5,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.001 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATGGGAAGTCTGCATACA
R:
AACTATTGAGGTCCTGTCTGCA
Band lengths:
238-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains