BtaEX6108920 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006263 | GP2
Description
glycoprotein 2 (zymogen granule membrane) [Source:HGNC Symbol;Acc:HGNC:4441]
Coordinates
chr25:18114480-18118225:-
Coord C1 exon
chr25:18118027-18118225
Coord A exon
chr25:18115060-18115500
Coord C2 exon
chr25:18114480-18114590
Length
441 bp
Sequences
Splice sites
3' ss Seq
ATAAACCCATTATTCTCCAGGTT
3' ss Score
7.72
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TAGTTCTCTTCTTACCCCTGCAGTCAGGGGAGCAATCTCTGTCTCCCCAATCGTATCTGGGTCTCCCCACGACCACTGCATGGAGAGTCTGCAGGTTGCTGAGTGACCCACATGTCTCAGCTCCTGGAAAGGATGACTTCTGTCCTGTGGCTGGCCCTGGCCTCCTACATTCTGACCCTGTCATCTACAGAACAGCAAG
Seq A exon
GTTACAGAAACTCCACCAACACTGGTTCCTATGAAAAGGACTTGGATTGCGGAGCCCCTGGCACCCCAGAGGCCCAGCTCTGTTTTGACCCCTGCCAGAATTACACCCTCCTGAATGAACCCTTTCGAAGCACAGAGAATACAGAAGACATCCAAGGCTGTGACAGTGACAAACACGGCTGGTACCGATTTGTGGGGGACGGAGGAGTGAGGATGCCAGAGGACTGTGTCCCCACGTTCCGATGCCAGACGTCTGCACCCCTGTGGCTGAATGGCACCCATCCTGGCCTTGGGGAGGGCATCGTCAACCGCACTGCCTGTGCCCACTGGAGTGGCAACTGCTGCCTCTGGAAGACAGAGGTGCTGGTGAAAGCCTGCCCGGGCCCATACTACGTGTACCGGTTGGAGGGCACCCCTCAATGTAGTCTGAGATACTGCACAG
Seq C2 exon
ACCCTGCCACCGCGGAGGACAAGTGTGACAGGACCTGCCGCCCCGAGGAGGAGTGTCGCCTCGTCAGTGGCACCTGGGGCTGCTTCTGCAGACAGGACCTCAACGTCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006263-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTCTTACCCCTGCAGTCA
R:
GGAGACGTTGAGGTCCTGTCT
Band lengths:
305-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]