RnoEX6004570 @ rn6
Exon Skipping
Gene
ENSRNOG00000015716 | Gp2
Description
glycoprotein 2 [Source:RGD Symbol;Acc:621695]
Coordinates
chr1:189176846-189181901:-
Coord C1 exon
chr1:189181060-189181901
Coord A exon
chr1:189178250-189178693
Coord C2 exon
chr1:189176846-189176956
Length
444 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTCTGTTCTTCTCAGGTT
3' ss Score
9.88
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGCTTGCTATGGATTTCATCTTGAAATGCCCGTATTCCCATCCCACTCCATTTCTGCGTGTCATGTTAACAGTTTGGGTTCCGAGAACCTGGACCTGTTGCCATATGTTGGCCATGTAATGTCTGTATTTTCAGAGAAGTTGCTGCATCAATATTATTTGGATTATGTACTCTTAAGACAAAACTTCTTCACCAACAACAGTGCCTTTCTGGAGTGGTTCAGAGACCTAAGTGAGACAAATCATGGAAGGGGCTTCAAGCAAATAGAGTCATATGATAGGTGCTGAGCCGACAGGCGTTTCAACCTTACCCAGGGGCTAAAGGTCTGTTAGCTTGACCTAATGTGAGCCTTTCCTTTTCTATAGATTTATGGAGGATCTGCAGGCTGCAGAATAACCAGCAAGCCTCACTTTATGAAAAGGATGGTGGCTTGTGACCTGCTGTGGCTGGCTGCAGCCTCCTGCCTTCTGACACTGGTATTTCCATCTACAACACATCAAG
Seq A exon
GTTATGGAAACCCCAGAAACACCTCCAATGTGGACTTGGACTGTGGAGCCCCCGGCTCATCAAGTGCTGGCATCTGCTTTGACCCCTGCCAGAATCACACCGTCCTGAATGATCCCTCCAGAAGCACAGAGAACACGGTGTCATCGGAGGAGTGTGATAGTCACCTGAGGGGCTGGTACCGCTTTGTGGGTGATGGGGGAGTGAAGATGCCAGAGACCTGTGTGAATGTGTACCGGTGCCACACCTATGCTCCCATGTGGCTGAGTGAATCACACCCCATCCTTGGAGATGGCATTGTCAACCGCACAGCCTGTGCCAACTGGAATGAAAATTGTTGTTTCTGGAGTTCTGAGGTCCAGGTGAAGGCCTGTTTGGGAGAATCAGGAGAATATCACGTGTACAAGTTACAGGGCACCCCTGAATGCAGTCTGAGATACTGTACAG
Seq C2 exon
ACCCCTCCACCGCACCGAAAAAGTGTGAGATTGCTTGTCGTCCTGAGGAGGAATGTGTATTCCAAAATAACAGCTGGACCTGTGTCTGTAGGCAAGACCTCAATGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015716-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGGAAGGGGCTTCAAGC
R:
TTGCCTACAGACACAGGTCCA
Band lengths:
356-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]