GgaEX6040027 @ galGal4
Exon Skipping
Gene
ENSGALG00000004345 | OIT3
Description
oncoprotein induced transcript 3 [Source:HGNC Symbol;Acc:HGNC:29953]
Coordinates
chr6:10824903-10829615:-
Coord C1 exon
chr6:10829507-10829615
Coord A exon
chr6:10825504-10825878
Coord C2 exon
chr6:10824903-10825013
Length
375 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGCTGCATTCCTCAGCCC
3' ss Score
6.16
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
CAAGGCTCTGTTACTCGAATATTATCTGTTCCTTGGTTGAGTGGGATGTTCCAGTACTTGTTTTTCTGTCTCTGCTTCGTTGTCCAGCTGCAGCCAGCTTCTTCAATGG
Seq A exon
CCCTGGACCCCTGCTCCGCCTACATCAGCCTGAACGAGCCCTGGAGGAACACCGATCATCAGATAAATGGCTCCCACGGCCAGCCCACGTGCGATAACCAGATCGATGGGGAGTGGTACCGCTTCACCGGCATGGCTGGCGATGCTATGCCCACCTTCTGCATCCCTGAGAACCACTGTGGGACGCATGCTCCCATCTGGCTGAACGGCAGCCACCCACGAGAGTCGGATGGCATCGTCTCACGCCAGGCCTGTGCCAGCTTCAATGGGAACTGCTGCCTGTGGAATACCACGATTGAGGTCAAGGCGTGTCCGGGCGGGTACTATGTCTATCACTTAACAAAGCCTAGTGTCTGTTTCCACGCGTACTGTGGGC
Seq C2 exon
ATTTTTATGACATCTGTGATGTGGTGGATTGCCAGGGCTCCTGCCTGGACACCAATGACTGCACATGTTCCCCAGGGACAAGACTTGGACCTGATGGACAGACATGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004345-'2-1,'2-0,6-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCTGTTACTCGAATATTATCTG
R:
ACATGTCTGTCCATCAGGTCCA
Band lengths:
214-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]