RnoEX0062214 @ rn6
Exon Skipping
Gene
ENSRNOG00000046365 | Oit3
Description
oncoprotein induced transcript 3 [Source:RGD Symbol;Acc:735082]
Coordinates
chr20:29025822-29029905:-
Coord C1 exon
chr20:29029740-29029905
Coord A exon
chr20:29026885-29027013
Coord C2 exon
chr20:29025822-29025929
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGGGTCCCTTTCATCCCCAGTCC
3' ss Score
9.38
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CTAAGACTGCAGAGGGATACTTTTCTCTAAGTGCCTGAGAAAAGAGCAAGGCAGAACTGTTGTCACGGGCGTCTTCTGCTCCGCTCTGGCAGCTGGATCAGAAAGATGCCTCTGTCCCTGCTGCTCGCCTGCCTCTTCACCACTGTCACCTTGCAGTCACCCGTGG
Seq A exon
TCCTAGATCCTTGTTCTGCTTATATCAGTCTGAATGAGCCCTGGAGGAACACTGACCATCAGTTCGATGAGTCCCAAAGTCAGCCTCTCTGCGACAACCATATGGATGGGGAGTGGTACCGCTTCACAG
Seq C2 exon
ATTTCTATGACATTTGTGATGAGGATTGTCATGGCAGCTGCTTGGACACCACTGAGTGCGCATGCTCTCCGGGAACCTCGCTGGGCCCAGATGGGCAGACTTGCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046365-'0-1,'0-0,1-1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGCAGAGGGATACTTTTCTCT
R:
CGAGGTTCCCGGAGAGCAT
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]