DreEX6059927 @ danRer10
Exon Skipping
Gene
ENSDARG00000087227 | oit3
Description
oncoprotein induced transcript 3 [Source:ZFIN;Acc:ZDB-GENE-130530-907]
Coordinates
chr13:4573465-4578432:-
Coord C1 exon
chr13:4578285-4578432
Coord A exon
chr13:4575305-4575679
Coord C2 exon
chr13:4573465-4573578
Length
375 bp
Sequences
Splice sites
3' ss Seq
CACTTTCAATCTCTTATCAGCCT
3' ss Score
6.35
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
ACCACAAAGCTCTTCGAAAACCTTAAGCATTTTGACAGGAACGGCTGGATGTACATCTGTGACTTTCGGGTTCTGCTGTATCTACAGTTGGACATGCTTTTTACAGTGTTTGTTGTTCTGCAAGCTGTGAGTGATACACAGGCCATAG
Seq A exon
CCTTAGATCCCTGCTCAGCGTACATTAGTCTGAACGAACCATGGAGGAACACTGACTACCATGTCAACAACTCTGCGGGTGTCCCTCTGTGCGACCGGCATGTATCAGGGGAATGGTATCGCTTCACGGGTATGGCTGGAGATGCTATGCCAACCTTCTGTATCCAAGAAAACCACTGTGGAACCCATGCGCCCATTTGGCTGAATGGGAGTCACCCTGGGCCTAGTGATGGAGTTGTTACTCTATCTGCGTGTGCTAGCTTCAATAATAACTGCTGCCATTGGACTGCTAGTGTGGAGATAAAGGCCTGTCCGAGAGGTTACTATGTCTATCGTTTACCCCGGCCCTCTGTCTGCTTCCACGTTTACTGTGGCC
Seq C2 exon
ATTTCTATGACATATGTGATGAGATAGAGTGTACAGGATCTGACTGCCCTGTCGAGCCTGAATGCCGATGCTCTGAGGGAACCATTCTAGGCCCTGATGCACAGACATGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087227-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAAAGCTCTTCGAAAACCT
R:
ATGTCTGTGCATCAGGGCCTA
Band lengths:
256-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]