BtaEX6105609 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009348 | OIT3
Description
oncoprotein induced transcript 3 [Source:HGNC Symbol;Acc:HGNC:29953]
Coordinates
chr28:29074151-29079823:+
Coord C1 exon
chr28:29074151-29074211
Coord A exon
chr28:29078584-29078958
Coord C2 exon
chr28:29079716-29079823
Length
375 bp
Sequences
Splice sites
3' ss Seq
GGTGTCCTTTTCATTCCCAGCCC
3' ss Score
7.77
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATGCCTCAGCTCCTGCTTCTCGCCTGCCTCCTCATCATAGTAACACGGGTGGCACCCAGGG
Seq A exon
CCCTAGACCCTTGTTCTGCTTACATCAGTCTGAACGAGCCATGGAGGAACACTGAGCACCAATTCGATGAGTCTCGAGGTTCCCCTCTATGTGACAACAGTGTGGACGGGGAGTGGTACCGCTTCACAGGCATGGCAGGGGATGCTATGCCCACCTTCTGCATACCGGAAAACCACTGCGGAACCCATGCACCTGTCTGGCTCAATGGCAGCCACCCTCTGGAAGGTGATGGCATTGTGCAACGCCAGGCCTGCGCGAGCTTCAACGGAAACTGCTGCCTATGGAACACCACCGTGGAGGTTAAGTCCTGCCCTGGAGGCTACTATGTGTATCGTCTGACCAAGCCCAGCGTCTGCTTTCATGTCTACTGTGGTC
Seq C2 exon
ATTTTTATGACATCTGTGATGACGACTGCCATGGCAGCTGCCTGGGTACCAGTGAGTGCACATGTGCTCCAGGAACCGTGCTCGGCCCCGACAGACAGACATGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009348-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
80%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]