MmuEX6048503 @ mm10
Exon Skipping
Gene
ENSMUSG00000009654 | Oit3
Description
oncoprotein induced transcript 3 [Source:MGI Symbol;Acc:MGI:1201782]
Coordinates
chr10:59437710-59441778:-
Coord C1 exon
chr10:59441623-59441778
Coord A exon
chr10:59438541-59438915
Coord C2 exon
chr10:59437710-59437817
Length
375 bp
Sequences
Splice sites
3' ss Seq
GGGTCCTCTTTCACCCCCAGTCC
3' ss Score
8.35
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
AGAGGGATATTCTCCCCTAAGTGCTTGAGAGAACAACGGAGAACTGTTGTTACACCGGGAATCTTCTATCCACTCCTGGCAGCTGGATCAGAACGATGCCTCTGTCCCTGCTGCTCACCTGCCTCTCCACCACAGTCACCTTGGTGTCACCTGCGG
Seq A exon
TCCTAGATCCTTGTTCCGCTTACATCAGTCTGAACGAGCCCTGGAGGAACACTGACCACCAGTTCGACGAGTCCCAGAATCAACCTCTTTGCGACAACCATATGAACGGGGAGTGGTATCGCTTCACGGGGATGGCAGGAGATGCCATGCCTACCTTCTGCATACCGGAAAATCACTGTGGGACCCATGCTCCTGTCTGGCTCAATGGCAGCCACCCCCTAGAAGAGGATGGCATTGTGCAACGCCAGGCCTGTGCCAGCTTCAAAGGAAACTGCTGTCTGTGGAACGCCACGGTGGAAGTCAAGGCCTGCCCCAGAGGCTACTACGTGTATCGGCTGGCCAGACCCAGCGTCTGCTTCCATGTCTACTGTGGCC
Seq C2 exon
ATTTCTATGACATCTGTGATGAGGATTGTCACGGCAACTGCCTGGATACCACCGAGTGTGCATGCTCTCCAGGAACCTCGCTGGGCCCAGATGGGCAGACTTGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009654-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATATTCTCCCCTAAGTGCTTGA
R:
GCAAGTCTGCCCATCTGG
Band lengths:
256-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types