MmuEX6013539 @ mm10
Exon Skipping
Gene
ENSMUSG00000030954 | Gp2
Description
glycoprotein 2 (zymogen granule membrane) [Source:MGI Symbol;Acc:MGI:1914383]
Coordinates
chr7:119452844-119457296:-
Coord C1 exon
chr7:119457161-119457296
Coord A exon
chr7:119454202-119454648
Coord C2 exon
chr7:119452844-119452954
Length
447 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTCTGTTCTTTTCAGGTT
3' ss Score
11.64
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTTATGAAGAATCTGCAGGCTGCAGAGTAACCTGCAAGCTTCACTTTATGAAAAGGATGGTGGGTTGTGACCTGCTGTGGCTGGCTGCAGCCTCCTGCGTTCTGACACTGGTATCTCCATCTACAATACATCAAG
Seq A exon
GTTATGGGAGGCCCAGGAACAGCTCCAATCTGGACTTGGACTGTGGATCCCCTGACTCTCCAAGTTCTGGAATCTGCTTTGATCCCTGCCAGAATCACACGGTCCTGAATGATCCTACCAGAAGCACAGAGAACAACGATTCATCAGTTGCATGGTGTGATGATAACCTGCACGGCTGGTACCGCTTTGTGGGTGATGGAGGAGTGAAGATGCCAGAGACCTGTGTGAGTGTGTTCCGGTGCCACACCTCTGCCCCCATGTGGCTGAGTGGATCTCACCCCATCCTTGGAGATGGCATTGTCAGCCACACAGCCTGTGCCAACTGGAATGAAAATTGTTGCTTCTGGCGTTCTGAGGTCCAGGTGAAGGCCTGTTCTGAAGAACTAGGAGAATATCACGTGTACAAGTTACAGGGTACCCCTGAATGCAGTCTGAGATACTGCACAG
Seq C2 exon
ACCCCTCCACTGCACCCAAGAATTGTGAGATTACTTGTCGTCCTGAGGAGGAATGTGTATTCCAAAATAACAACTGGTCCTGTGTCTGTAGGCAGGACCTCCATGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030954-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTATGAAGAATCTGCAGGCTGC
R:
CAGAAACATGGAGGTCCTGCC
Band lengths:
246-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types