DreEX6070787 @ danRer10
Exon Skipping
Gene
ENSDARG00000103650 | si:ch73-329n5.1
Description
si:ch73-329n5.1 [Source:ZFIN;Acc:ZDB-GENE-131121-475]
Coordinates
chr12:44445389-44451839:-
Coord C1 exon
chr12:44451689-44451839
Coord A exon
chr12:44447109-44447489
Coord C2 exon
chr12:44445389-44445522
Length
381 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTTTGTTTTCACAGACC
3' ss Score
10.21
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCTGGTTATGATACTATAAACTCCATAAATTACTTTGTGATTCCTGGATCAAACAATGGAAGCTCCATCTCAAACCTCAACACCTCCAGTAATGTCAATGTTCCAGGTCGATGGGCCTTCAGAGTGGACACTGGACCACACACAATCACCA
Seq A exon
ACCTTCCCTTTGACCCCTGCAATAAATATACTGTACTGGACGATCCTTGGAGAACCACAGACAATCGAGAACCCATCGTAATTGGATGTGACTCTACATTAAGCTGGTTCGGCTGGTATCGTCTTTTCATTAATGGTCACAGCGTTCAGATGCCAGACACATGTGTTGATATGAATAGTTGTGGCACTATTGCCCCACTGTGGCTGAGTGGAGGACATCCAACAGTTCAGGATGGAGTGGTCACTCGAGATGTCTGCGGTTCCCTTGACAATATCTGCTGCAATTACCAGTCCAATCCAATTAAAGTGAAAGCCTGCCCAGGAGGGTATTATGTCTATAAATTAGTAAAACCTGTTAGCTGCAGTTTGGGCTACTGTGCAG
Seq C2 exon
GATCAGGAAACATCTACACATTTGGTTCAGAAGGAGGAGACTCGATAAATCCTGCTGTTGATGATGGAAGCTCCTCTGTTATTCCACTGTTGAGTCCGTTTCAGTTCTTTGGCCGCACATACCAGCAGATTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103650-'9-10,'9-8,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF061199=NIDO=PD(57.1=86.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATAAATTACTTTGTGATTCCTGG
R:
AAATCTGCTGGTATGTGCGGC
Band lengths:
262-643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]