HsaEX0028233 @ hg19
Exon Skipping
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:17829]
Coordinates
chr19:6732487-6733312:-
Coord C1 exon
chr19:6733179-6733312
Coord A exon
chr19:6732998-6733073
Coord C2 exon
chr19:6732487-6732560
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGACCCTCCCACCAGGTA
3' ss Score
11.37
5' ss Seq
AGCGTGAGA
5' ss Score
2.98
Exon sequences
Seq C1 exon
GTGATGATCCGGGAGAAGAACCCCGATGGCTTCCTGTCGGCAGCGGAGATGCCCCTTTTCAAGCTCTACATGGTCATGTCCGCCTGCTTCCTGGCCGCTGGCATCTTCTGGGTGTCCATCCTCTGCAGGAACAC
Seq A exon
GTACAGCGTCTTCAAGATCCACTGGCTCATGGCGGCCTTGGCCTTCACCAAGAGCATCTCTCTCCTCTTCCACAGC
Seq C2 exon
ATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCTTGCCGTCATGTACTACATCGCACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PU(16.5=97.7)
A:
PF068148=Lung_7-TM_R=FE(20.3=100)
C2:
PF068148=Lung_7-TM_R=FE(15.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAACCCCGATGGCTTCCT
R:
GTAGTACATGACGGCAAGGCC
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)