RnoEX6038508 @ rn6
Exon Skipping
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9711493-9712232:+
Coord C1 exon
chr9:9711493-9711626
Coord A exon
chr9:9711726-9711801
Coord C2 exon
chr9:9712159-9712232
Length
76 bp
Sequences
Splice sites
3' ss Seq
CCCCATTCTCCCTCTGGCAGGTA
3' ss Score
10.47
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
Exon sequences
Seq C1 exon
GTAATGATCCGAGAGAAGAATCCAGAAGGCTTCCTGTCAGCAGCTGAAATCCCCCTCTTCAAACTCTATCTAATCATGTCCGCCTGCTTCCTGGCTGCCGGCATCTTCTGGGTGTCCGTGCTCTGCAAGAACAC
Seq A exon
GTACAGTGTCTTTAAGATCCACTGGCTCATGGCAGCCCTGGCGTTCACGAAGAGTGTCTCCCTACTCTTCCACAGC
Seq C2 exon
ATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCTCGCCGTCATGCATTACATCACTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128-'16-12,'16-10,18-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(15.2=100)
A:
PF068148=Lung_7-TM_R=FE(8.6=100)
C2:
PF068148=Lung_7-TM_R=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGCTTCCTGTCAGCAG
R:
ATGTAATGCATGACGGCGAGG
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]