HsaEX0028899 @ hg19
Exon Skipping
Gene
ENSG00000121964 | GTDC1
Description
glycosyltransferase-like domain containing 1 [Source:HGNC Symbol;Acc:20887]
Coordinates
chr2:144969082-144993307:-
Coord C1 exon
chr2:144993243-144993307
Coord A exon
chr2:144987808-144987889
Coord C2 exon
chr2:144969082-144969146
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATCTTAATATTTTATTACAGTGG
3' ss Score
6.25
5' ss Seq
ATGGTATAG
5' ss Score
2.86
Exon sequences
Seq C1 exon
CAGGTATCTCTGCATTAGCCAGATTGGACATATGTAAAGGGACATCAGTATATCTGGATCATCAG
Seq A exon
TGGTATAATGTGTTATAGAGGTGGACAAGCCTGCAGATTGAAGTGGGGATCGTCCAGATTGTTCCCTTCCCTGGACCATATG
Seq C2 exon
ATTGTGCTTCAAGAAGACCATAGGGAAGAACGCATTTTCATCTTGCTGCAAAAGTTGCAATAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121964-'10-16,'10-13,11-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTATCTCTGCATTAGCCAGA
R:
CTTTTGCAGCAAGATGAAAATGCG
Band lengths:
119-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)