HsaEX0028899 @ hg38
Exon Skipping
Gene
ENSG00000121964 | GTDC1
Description
glycosyltransferase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20887]
Coordinates
chr2:144211515-144235740:-
Coord C1 exon
chr2:144235676-144235740
Coord A exon
chr2:144230241-144230322
Coord C2 exon
chr2:144211515-144211579
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATCTTAATATTTTATTACAGTGG
3' ss Score
6.25
5' ss Seq
ATGGTATAG
5' ss Score
2.86
Exon sequences
Seq C1 exon
CAGGTATCTCTGCATTAGCCAGATTGGACATATGTAAAGGGACATCAGTATATCTGGATCATCAG
Seq A exon
TGGTATAATGTGTTATAGAGGTGGACAAGCCTGCAGATTGAAGTGGGGATCGTCCAGATTGTTCCCTTCCCTGGACCATATG
Seq C2 exon
ATTGTGCTTCAAGAAGACCATAGGGAAGAACGCATTTTCATCTTGCTGCAAAAGTTGCAATAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121964_MULTIEX1-11/31=9-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTATCTCTGCATTAGCCAGA
R:
CTTTTGCAGCAAGATGAAAATGCG
Band lengths:
119-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development