HsaEX0028915 @ hg38
Exon Skipping
Gene
ENSG00000121964 | GTDC1
Description
glycosyltransferase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20887]
Coordinates
chr2:144145572-144235740:-
Coord C1 exon
chr2:144235676-144235740
Coord A exon
chr2:144211515-144211579
Coord C2 exon
chr2:144145572-144145739
Length
65 bp
Sequences
Splice sites
3' ss Seq
AGGAATCATCTTTCTTCCAGATT
3' ss Score
6.92
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CAGGTATCTCTGCATTAGCCAGATTGGACATATGTAAAGGGACATCAGTATATCTGGATCATCAG
Seq A exon
ATTGTGCTTCAAGAAGACCATAGGGAAGAACGCATTTTCATCTTGCTGCAAAAGTTGCAATAGAA
Seq C2 exon
GACCCTCTTTGCAAGTTCAGTGCTTAACCTGACCGAACTGGCTGCCCTTCGGCCTGACCTTGGGAAACTGAAAAAGATTCTGTATTTTCACGAGAACCAGTTGATATATCCTGTCAAGAAATGTCAGGAGAGGGATTTCCAATATGGATACAACCAAATTCTTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121964_MULTIEX1-13/31=9-20
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF120383=DUF3524=FE(33.5=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000344850fB3092
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGATTGGACATATGTAAAGGG
R:
CCCTCTCCTGACATTTCTTGACA
Band lengths:
183-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development