BtaEX0016455 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001132 | GTDC1
Description
Bos taurus glycosyltransferase-like domain containing 1 (GTDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076035]
Coordinates
chr2:52551100-52584512:+
Coord C1 exon
chr2:52551100-52552311
Coord A exon
chr2:52578770-52578835
Coord C2 exon
chr2:52584309-52584512
Length
66 bp
Sequences
Splice sites
3' ss Seq
GGAAATCATCTTTCTGCCAGGTT
3' ss Score
4.9
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TGCCTGTGAGATTTTAGACTATACTCAGCAGAGGTTCTTGACAGTTTTTTGGATTATAGACCTTTCTGCAAATCTCATGAACTATTGACCTTCTCCCTAGAGAGAAATACATTTACATAAACCCACACATTTTGCATATCTCATTCAGGAGTACATAGACTCCTGAAGGCTGTCCATGTACCAAGGTTAAGGAGCTTTAATCTAATTACTTTTTTTTTGTCATAATTAATTTGGGAAATCCTTGGAAAGACTGAAAAAAGCTCTTATTAATTAAGTCTCAGAATATTTTTATTCTTAGAGGTTCTTCTATCTTGGGTTGTCCAAGAATCAGACTACTAGATCATTCAAGTAAACTCTTATCCAGGTAAGGATTCAGAATTCAGATTGGATTTAGTTTGAAGATAGCAACTTTACTATGTCTTTTGTGATTTCACAGGTATCTCTGCATTAGCCAGGTTGGACAAATGTAAAGAGAGACATCACTGTATCTGGAACATCAG
Seq A exon
GTTGTGCTTAAAGAAGACTACAAGGGAAGAACATATTTCCTTCTTGCCACAAACATTGCAGTAGAA
Seq C2 exon
GATCTGTGAAGGTTTGAAAGGGCCAATGAGTATTCTCATCCTTGAGGCATTCTATGGTGGGTCCCATAAACAGCTGGTGGATCTGCTTCAAGAAGAGTTAGAAGACTCTGTCCTTTATACCCTGCCTGCAAAGAAATGGCACTGGAGAGCAAGGACATCAGCTTTATACTTCTCTCAGAATATTCCCACCAGTGAGCACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001132_MULTIEX1-1/3=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF120383=DUF3524=PU(35.3=98.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTAGCCAGGTTGGACAA
R:
GGCAGGGTATAAAGGACAGAGT
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development