BtaEX0016456 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001132 | GTDC1
Description
Bos taurus glycosyltransferase-like domain containing 1 (GTDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076035]
Coordinates
chr2:52551100-52661174:+
Coord C1 exon
chr2:52551100-52552311
Coord A exon
chr2:52584309-52584512
Coord C2 exon
chr2:52661007-52661174
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTAATATCTAGGAT
3' ss Score
10.44
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TGCCTGTGAGATTTTAGACTATACTCAGCAGAGGTTCTTGACAGTTTTTTGGATTATAGACCTTTCTGCAAATCTCATGAACTATTGACCTTCTCCCTAGAGAGAAATACATTTACATAAACCCACACATTTTGCATATCTCATTCAGGAGTACATAGACTCCTGAAGGCTGTCCATGTACCAAGGTTAAGGAGCTTTAATCTAATTACTTTTTTTTTGTCATAATTAATTTGGGAAATCCTTGGAAAGACTGAAAAAAGCTCTTATTAATTAAGTCTCAGAATATTTTTATTCTTAGAGGTTCTTCTATCTTGGGTTGTCCAAGAATCAGACTACTAGATCATTCAAGTAAACTCTTATCCAGGTAAGGATTCAGAATTCAGATTGGATTTAGTTTGAAGATAGCAACTTTACTATGTCTTTTGTGATTTCACAGGTATCTCTGCATTAGCCAGGTTGGACAAATGTAAAGAGAGACATCACTGTATCTGGAACATCAG
Seq A exon
GATCTGTGAAGGTTTGAAAGGGCCAATGAGTATTCTCATCCTTGAGGCATTCTATGGTGGGTCCCATAAACAGCTGGTGGATCTGCTTCAAGAAGAGTTAGAAGACTCTGTCCTTTATACCCTGCCTGCAAAGAAATGGCACTGGAGAGCAAGGACATCAGCTTTATACTTCTCTCAGAATATTCCCACCAGTGAGCACTACAG
Seq C2 exon
GATCCTCTTCGCAAGCTCAGTGCTTAACCTGACTGAACTGGCTGCCCTTCGACCTGACCTTGGGAAATTGAAAAAGATTCTGTACTTTCATGAGAACCAATTGGTATATCCTGTCAAGAAATGTCAGGAGAGGGATTTCCAATATGGATACAACCAAATTCTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001132_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF120383=DUF3524=PU(35.3=98.3)
C2:
PF120383=DUF3524=FE(33.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGAAATCCTTGGAAAGACTGA
R:
CACTGAGCTTGCGAAGAGGAT
Band lengths:
292-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development