DreEX0036495 @ danRer10
Exon Skipping
Gene
ENSDARG00000020642 | gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050417-8]
Coordinates
chr9:26029851-26057223:+
Coord C1 exon
chr9:26029851-26029894
Coord A exon
chr9:26050274-26050468
Coord C2 exon
chr9:26057056-26057223
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTGATCTCTGCAGTAA
3' ss Score
7.84
5' ss Seq
CAGGTCGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GCAGTGACGTCATGACGCAAAACACGCGGCGCTTTCAGGAAGAG
Seq A exon
TAAATAGCCTGCGTCCATGAGTGTGCTCTTGCTGGAGGCGTTCTATGGCGGCTCCCACAAACAGCTGCTTGATCTTCTCAAGGAAAGTGTTGAAGACTGTGTGAGCTTCACTCTGCCTGCGAAAAAATGGCACTGGAGAGCCAGAACCTCTGCTCTGTACTTCATGCAAGCAGTTCCAGCAAATTCCTCATACAG
Seq C2 exon
GGTTTTGTTCACCAGCTCCGTTCTCAATCTAGCCGAGCTTGTAGCTCTTCGTCCTGATCTTGGCCATCTTAAGAAGGTTCTCTACTTCCATGAGAACCAGCTGGTCTATCCAGTCCGCAAAAGCCAAGAAAGAGATTTCCAATATGGCTACAACCAGATCCTCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020642-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF120383=DUF3524=PU(35.3=98.3)
C2:
PF120383=DUF3524=FE(33.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGACGCAAAACACGC
R:
TGAGAGGATCTGGTTGTAGCCA
Band lengths:
202-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]